Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1956
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          24   1.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   3.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   6.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   6.9  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 188 AEHISPITLPLGTPDQRSSAPRPP 259
           AE + P  LP G  +  SS P+PP
Sbjct: 39  AEEVDP--LPFGVENTISSVPQPP 60


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 161 AFSWVLSHARFGRGLLSD 108
           AFSW+ S     RGL+SD
Sbjct: 369 AFSWIGSDGWSARGLVSD 386


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 556 DLIKAEAVNVLPKHQRCQGNSATPFI 479
           ++I    V +L +  RC GN+ T F+
Sbjct: 146 EVIYTACVGLLERAFRCLGNNLTAFL 171


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 27   QVEIAGLPPSPGDEGRGMSESN*LKPP 107
            +V    L PSP D GR    S+ L  P
Sbjct: 1371 RVPTVDLSPSPSDRGRNDDGSDRLTSP 1397


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -3

Query: 277 PADREGWWS-WRRRPLVRRPEGEGDGRDVLRTKRFAFPP 164
           P+ +  W+  W+    V R +G  DG+ ++       PP
Sbjct: 204 PSPKTPWYKGWK----VERKDGNADGKTLIEALDAILPP 238


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 516 IKDVKEIRPRHLSEDASERGWAANYAT 436
           I  + EIR R+    +S  GW  N AT
Sbjct: 326 ISSLDEIRTRYKDSSSSVEGW-ENRAT 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,254
Number of Sequences: 438
Number of extensions: 4313
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)