Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1955
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   1.7  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   4.0  
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    26   5.3  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    26   5.3  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    26   5.3  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    26   5.3  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    26   5.3  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   7.0  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    22   8.9  
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar...    25   9.3  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   9.3  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   9.3  

>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 370 YLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYV 498
           YL+ +L    PN  Y    Q A +  +DY   E IRI+E   V
Sbjct: 32  YLLRSLLANVPNALYHSQLQAACQKFQDYCDLEEIRIIEAKRV 74


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +1

Query: 256 DTMKLIVNWSGK-EFLRETW---TRFVEDSFPIVNDQEVMDVY 372
           D ++ +  W  K + ++  W   T   E SFP++ND+E + V+
Sbjct: 230 DDLETLPKWPDKVKKMQRNWIGRTTGFEISFPLLNDKETLTVF 272


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 499 GMNNEYRISLAKKGGGCPIMNIPQR 573
           G++NE  I L +K G CP + I  R
Sbjct: 105 GLSNENLIKLTQKSGECPPLYINSR 129


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 205 GKNQKLTLFKEIRSVKPDTMKLIVNWSGKEFLRETWT 315
           G N  +TL KEI   K        NWS ++FL+  W+
Sbjct: 186 GANDIITLEKEIAMFKKKK-----NWSDEQFLQYVWS 217


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
 Frame = +1

Query: 100 KNAKRKKHLVEHEQEEKQW-DLLD-----NYMVAEDPFLGPGKNQ--KLTLFKEIRSVKP 255
           KN  + + +V H+ + K+W DL D     N   + D  +   +++   L++   I+ + P
Sbjct: 354 KNKAKVQKIVSHKNQRKRWFDLTDVDPYTNLQDSTDNDISESESEGGDLSMSPLIKGLVP 413

Query: 256 DTMKLIVNWS 285
           DT+ L  ++S
Sbjct: 414 DTLSLSKSFS 423


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 532 KKGGGCPIMNIPQRVHQLVRVVCEPRSYGENF 627
           ++G G  +++ P++VH+LVR V    + GE+F
Sbjct: 115 QEGIGSALLDEPEKVHKLVRAV--KSTLGESF 144


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 7   PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEK 150
           P+ M + S  P+     VY+    + L C   NAK  + LV+ + EE+
Sbjct: 387 PVQMVHRSALPSQDHWKVYELITRRFLACCSDNAKGAETLVQVKMEEE 434


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -3

Query: 477 SDYFVGHVVFFPPKSVLSEELVAPVGACGFEVG 379
           +D   GH +  PP+ +   +++A + +C  ++G
Sbjct: 558 ADLKFGHYMKLPPRIMFYTQMIATIWSCFVQIG 590


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 22.2 bits (45), Expect(2) = 8.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 349 DQEVMDVYLVANLKPTRPNRCYKFLAQHALR 441
           D +++ ++    + P  P    KFLA  ALR
Sbjct: 281 DLDLVQIHPTGFVDPKDPTALTKFLAAEALR 311



 Score = 21.0 bits (42), Expect(2) = 8.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 451 DYVPHEVIRIVEPSYVGMNN 510
           DYV  E++++  P Y+ +N+
Sbjct: 333 DYVTGEMMKLKSPVYLVLNS 352


>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 61  YDNKYYKNLGCLIK-NAKRKKHLVEHEQEEKQWDLLDNYMVAED 189
           Y+   Y  L  L K + K+ K + +H+   + W LLD     +D
Sbjct: 238 YEESNYTRLPKLSKKDLKKSKRVKKHDYGGEDWSLLDRKFHDDD 281


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 335  SPL*TTKR*WTCTSSPTSNPHAPTGATSSSLN 430
            SP+    R  +  + P SNP+ P    SS++N
Sbjct: 964  SPVAAASRISSSPNMPPSNPYTPIAVASSTVN 995


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 229 FKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSF 336
           F  + S+ P   +LIVN    + +   WT   +D +
Sbjct: 109 FSSVNSLSPSLFQLIVNRMRFDAIHPEWTNGSDDEY 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,716
Number of Sequences: 5004
Number of extensions: 64390
Number of successful extensions: 185
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)