Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1955
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               25   0.82 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.7  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 70  KYYKNLGCLIKNAKRKKHLVEHEQ 141
           KY  N  C I  A  K H++++++
Sbjct: 70  KYLTNYSCFITCALEKSHIIQNDE 93


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -1

Query: 641 PWVL*KFSPYERGSQTTRTSWCTRC--GMFMIGQPPPFLARLILYSLFMPT*DGSTILIT 468
           P +L  F PY  G Q       T     +  + +  P LAR +LY +++ T +   +  T
Sbjct: 643 PKILSVFEPYLEGKQQMTVFQRTLMVGSLGKLTETNPKLARSVLYKIYLNTMESHEVRCT 702

Query: 467 S 465
           +
Sbjct: 703 A 703


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 549 PNHEHSTASTP 581
           P+H HS A+TP
Sbjct: 430 PHHHHSHAATP 440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,695
Number of Sequences: 438
Number of extensions: 4712
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)