Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1952
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 29 0.46
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 1.8
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 27 2.4
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr... 27 3.2
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 26 4.3
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 26 5.6
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 26 5.6
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 26 5.6
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 25 7.5
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 22 9.4
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 25 9.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.9
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 9.9
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 25 9.9
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 29.5 bits (63), Expect = 0.46
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = -2
Query: 646 DGFVEVLPYDAV-----HKRLERVGVLAVDVHDWAAAALFSQT 533
DGFV++LPYD V + L R+G+ + W A F +T
Sbjct: 247 DGFVKILPYDRVFSDAKNSNLTRIGISSKT--SWCIATSFGET 287
>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 380 YLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYV 508
YL+ +L PN Y Q A + +DY E IRI+E V
Sbjct: 32 YLLRSLLANVPNALYHSQLQAACQKFQDYCDLEEIRIIEAKRV 74
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 627 SHMTRFTNDSNELVYSLWMFMIGQ 556
SH +F ND E Y W F+ Q
Sbjct: 203 SHTYKFVNDKGEFYYCKWHFITNQ 226
>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 162
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 509 GMNNEYRISLAKKGGGCPIMNIHS 580
G++NE I L +K G CP + I+S
Sbjct: 105 GLSNENLIKLTQKSGECPPLYINS 128
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +2
Query: 266 DTMKLIVNWSGK-EFLRETW---TRFVEDSFPIVNDQEVMDVY 382
D ++ + W K + ++ W T E SFP++ND+E + V+
Sbjct: 230 DDLETLPKWPDKVKKMQRNWIGRTTGFEISFPLLNDKETLTVF 272
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 215 GKNQKLTLFKEIRSVKPDTMKLIVNWSGKEFLRETWT 325
G N +TL KEI K NWS ++FL+ W+
Sbjct: 186 GANDIITLEKEIAMFKKKK-----NWSDEQFLQYVWS 217
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Frame = +2
Query: 110 KNAKRKKHLVEHEQEEKQW-DLLD-----NYMVAEDPFLGPGKNQ--KLTLFKEIRSVKP 265
KN + + +V H+ + K+W DL D N + D + +++ L++ I+ + P
Sbjct: 354 KNKAKVQKIVSHKNQRKRWFDLTDVDPYTNLQDSTDNDISESESEGGDLSMSPLIKGLVP 413
Query: 266 DTMKLIVNWS 295
DT+ L ++S
Sbjct: 414 DTLSLSKSFS 423
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 17 PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEK 160
P+ M + S P+ VY+ + L C NAK + LV+ + EE+
Sbjct: 387 PVQMVHRSALPSQDHWKVYELITRRFLACCSDNAKGAETLVQVKMEEE 434
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 7.5
Identities = 8/33 (24%), Positives = 19/33 (57%)
Frame = -2
Query: 487 SDYFVGHVVFFPPKSVLSEELVAPVGACGFEVG 389
+D GH + PP+ + +++A + +C ++G
Sbjct: 558 ADLKFGHYMKLPPRIMFYTQMIATIWSCFVQIG 590
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 22.2 bits (45), Expect(2) = 9.4
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 359 DQEVMDVYLVANLKPTRPNRCYKFLAQHALR 451
D +++ ++ + P P KFLA ALR
Sbjct: 281 DLDLVQIHPTGFVDPKDPTALTKFLAAEALR 311
Score = 21.0 bits (42), Expect(2) = 9.4
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +2
Query: 461 DYVPHEVIRIVEPSYVGMNN 520
DYV E++++ P Y+ +N+
Sbjct: 333 DYVTGEMMKLKSPVYLVLNS 352
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 71 YDNKYYKNLGCLIK-NAKRKKHLVEHEQEEKQWDLLDNYMVAED 199
Y+ Y L L K + K+ K + +H+ + W LLD +D
Sbjct: 238 YEESNYTRLPKLSKKDLKKSKRVKKHDYGGEDWSLLDRKFHDDD 281
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 345 SPL*TTKR*WTCTSSPTSNPHAPTGATSSSLN 440
SP+ R + + P SNP+ P SS++N
Sbjct: 964 SPVAAASRISSSPNMPPSNPYTPIAVASSTVN 995
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +2
Query: 239 FKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSF 346
F + S+ P +LIVN + + WT +D +
Sbjct: 109 FSSVNSLSPSLFQLIVNRMRFDAIHPEWTNGSDDEY 144
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 551 GGCPIMNIHSEYTNSFESFVNRVIWENFYK 640
GG P+ + SE + F ++ I+E +YK
Sbjct: 399 GGKPLKEVFSEILDLFRYIASKDIFEAYYK 428
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,973
Number of Sequences: 5004
Number of extensions: 65914
Number of successful extensions: 205
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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