Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1951
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23QK9 Cluster: Putative uncharacterized protein; n=2; ...    33   7.5  
UniRef50_Q2ZZ95 Cluster: Excinuclease ABC, C subunit, N-terminal...    33   9.9  
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ...    33   9.9  
UniRef50_A6N8J0 Cluster: DNA polymerase; n=2; Fusarium prolifera...    33   9.9  

>UniRef50_Q23QK9 Cluster: Putative uncharacterized protein; n=2;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 2061

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 736 KSRLVNMVTSFLIYLFVHTKFIPSMYLKKYIFKD-LTVIKFNVVS 605
           KS L + + SF I ++ H  +IPS++L  + F D +T I   +++
Sbjct: 128 KSSLTDKLFSFFIIIYQHFLYIPSIFLSLHRFSDSITAIALTIIA 172


>UniRef50_Q2ZZ95 Cluster: Excinuclease ABC, C subunit, N-terminal;
           n=1; Streptococcus suis 89/1591|Rep: Excinuclease ABC, C
           subunit, N-terminal - Streptococcus suis 89/1591
          Length = 280

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +2

Query: 410 NNTV*LIYILQHHDTATLKTLHFSNIVYINKSSQECILT*NLMGRNSQNIFDMTSFY*EL 589
           +N++  IYI +  D       H   I+++N+ S+   L+           +D + FY ++
Sbjct: 41  DNSILPIYIGKSKDVQKRFDSHLKKIMFLNRLSESTYLS--YFFEREDPFYDGSFFYCKI 98

Query: 590 FQYIITH 610
           FQY+I H
Sbjct: 99  FQYMIDH 105


>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
           n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
           ubiquinol oxidase subunit I - Carsonella ruddii (strain
           PV)
          Length = 606

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = -3

Query: 733 SRLVNMVTSFLIYLFVHTKFIPSMYLKKYIFKDLTVIKFNVVSNNILK*FLIKRGHIKNI 554
           S L+ +   F +  F+  K     Y K+YI++    + FN +  N    F  K+ +IKNI
Sbjct: 497 SILILIAVIFQLICFIFFKKNKHSY-KQYIYRSSEFLYFNNLLINNYNDFYYKKKYIKNI 555

Query: 553 LTVSSH 536
             ++SH
Sbjct: 556 FFITSH 561


>UniRef50_A6N8J0 Cluster: DNA polymerase; n=2; Fusarium
            proliferatum|Rep: DNA polymerase - Gibberella intermedia
            (Bulb rot disease fungus) (Fusariumproliferatum)
          Length = 1847

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 13/32 (40%), Positives = 24/32 (75%)
 Frame = -3

Query: 691  FVHTKFIPSMYLKKYIFKDLTVIKFNVVSNNI 596
            +++T+F P+ YLKKY++  +  +  N++SNNI
Sbjct: 1628 YINTEFRPA-YLKKYLYPIINDLWHNIISNNI 1658


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,113,516
Number of Sequences: 1657284
Number of extensions: 11150620
Number of successful extensions: 21026
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21019
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)