Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1951
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch...    28   1.2  
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    27   2.9  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    26   6.6  

>SPAC25B8.15c |||wybutosine biosynthesis protein
           Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 237

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 180 ATSRAQTYLARFFLC*IYPRSTDYFDSRTRR 272
           A+ + Q Y+ R ++C ++ RS +YF     R
Sbjct: 175 ASEKLQFYITREYMCFLFKRSVEYFTENGNR 205


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 381 ISMHCDF*NIRCNSAFKSSNYEVRCFCTSFD*RSYCL 271
           I +HCD    R   A  +SN  ++ +C+ FD  S CL
Sbjct: 190 IPLHCD--GARLWDAAVASNVSIKEYCSYFDSVSLCL 224


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 661 YLKKYIFKDLTVIKFNVVSN 602
           YL+K+ FKD T+ K N  SN
Sbjct: 799 YLEKFCFKDSTIPKSNDFSN 818


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,190
Number of Sequences: 5004
Number of extensions: 53717
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)