Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1951
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0771 - 7464383-7464655,7464901-7464915,7465098-7465418           29   3.0  
05_02_0038 + 5890103-5890522,5891442-5891515,5891605-5891680,589...    28   9.1  

>08_01_0771 - 7464383-7464655,7464901-7464915,7465098-7465418
          Length = 202

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 123 DITSLNEGINISQAGNIMHATSRAQTYLARFFL 221
           D+T  NEGI+++++ +IM  T    TY+  F+L
Sbjct: 145 DLTPTNEGIHLTRSADIMGTTYLHGTYINIFWL 177


>05_02_0038 +
           5890103-5890522,5891442-5891515,5891605-5891680,
           5891892-5891959,5892189-5892312,5892714-5892812,
           5893576-5893677,5893759-5893895,5894068-5894149,
           5894668-5894730,5895680-5895727,5895833-5895895,
           5896055-5896108,5896190-5896294
          Length = 504

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 273 LCVFWSRNNLWNADIFNIKKSAQDKSARDWWRA 175
           LC+F++  +LW + +  I +    +  +DWW A
Sbjct: 357 LCMFYAFFHLWLSILAEILRFGDREFYKDWWNA 389


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,068,030
Number of Sequences: 37544
Number of extensions: 263669
Number of successful extensions: 408
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)