Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1950
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    24   1.0  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    23   1.8  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   1.8  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    23   2.3  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   3.1  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    22   5.4  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    22   5.4  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   9.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.4  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = -3

Query: 681 YSHLTRYRSRVGRFTP 634
           Y++ ++YR ++G+FTP
Sbjct: 93  YTNWSQYRVKIGKFTP 108


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 456 HAYWTSLFLTSYKFDNSRYGSESSPA 379
           H Y T+  ++S+ FDN+  G     A
Sbjct: 333 HPYGTTRLMSSFAFDNNDQGPPQDDA 358


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 456 HAYWTSLFLTSYKFDNSRYGSESSPA 379
           H Y T+  ++S+ FDN+  G     A
Sbjct: 334 HPYGTTRLMSSFAFDNNDQGPPQDDA 359


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 456 HAYWTSLFLTSYKFDNSRYG 397
           H Y T+  ++S+ FDN+  G
Sbjct: 334 HPYGTTRLMSSFAFDNNDQG 353


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 393 ESSPAA-IFR-LAKLRRSYCNERFSGQLHSVNFVSRCARIVKFHSHKF 256
           ES+P+  + R L ++ R+YC E  +  ++ ++ +  C   V   S  F
Sbjct: 293 ESNPSERVMRELGRIFRAYCRENHASWVNHLSNIEDCLNYVPHISTGF 340


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory
          receptor candidate 44 protein.
          Length = 313

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 85 LAYVALVLRLCAIITCSVAQ*K*VYC 8
          L  +  VL +  +++CS  + K VYC
Sbjct: 15 LKCITKVLTILGLLSCSFPKKKLVYC 40


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory
          receptor candidate 4 protein.
          Length = 309

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 85 LAYVALVLRLCAIITCSVAQ*K*VYC 8
          L  +  VL +  +++CS  + K VYC
Sbjct: 11 LKCITKVLTILGLLSCSFPKKKLVYC 36


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -1

Query: 110 FITVSKCVSCLCSACIALVC 51
           F+   KC++  C+A +   C
Sbjct: 58  FVAPVKCLAFFCTALVIFYC 77


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -1

Query: 110 FITVSKCVSCLCSACIALVC 51
           F+   KC++  C+A +   C
Sbjct: 291 FVAPVKCLAFFCTALVIFYC 310


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -1

Query: 110 FITVSKCVSCLCSACIALVC 51
           F+   KC++  C+A +   C
Sbjct: 291 FVAPVKCLAFFCTALVIFYC 310


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,828
Number of Sequences: 336
Number of extensions: 2743
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)