Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1950
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    29   0.83 
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    26   5.8  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   7.7  

>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 278 TMRAHRDTKLTE*SCPLNRSLQYDRRNLASLNIAAGELSEPYR 406
           T+ A+   K +E + P+N +L +   NL+  +  A  LSEP+R
Sbjct: 170 TLEAYVIAKASEKAFPINETLSH-LANLSKQDCVANSLSEPFR 211


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 28  ELPNR*LLHTSAIQALHRQETHLETVIKKFVKSIS 132
           EL     L TSA +AL +QE+ L   I +F  +IS
Sbjct: 146 ELSTNERLDTSAREALVKQESELTVKIAQFTAAIS 180


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 356 NLASLNIA-AGELSEPYRELSNLYDVKKRDVQY 451
           NLA+L  A +GE  EP +  S++ D+K+ D  Y
Sbjct: 632 NLAALVPAYSGESKEPNKADSSVVDIKQSDSSY 664


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,309
Number of Sequences: 5004
Number of extensions: 44684
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)