Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1950
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1648 - 35036538-35037155                                         30   1.5  
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57...    29   4.5  
01_06_1129 + 34732007-34732091,34732814-34732934,34733012-347330...    28   6.0  
10_08_0373 - 17286104-17288839                                         28   7.9  
06_02_0251 - 13478902-13478952,13478989-13479055,13479168-134793...    28   7.9  
01_07_0240 - 42227132-42227245,42227332-42227394,42227484-422275...    28   7.9  

>04_04_1648 - 35036538-35037155
          Length = 205

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 104 TVSKCVSCLCSACIALVCNNYLFGSSVKVSLL 9
           + S+ VSCLC  C  L C  +    S+ +SLL
Sbjct: 3   SASRAVSCLCCPCKCLACGLFSCLCSILISLL 34


>07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-571542,
            571635-571885,572018-572128,572209-572320,572626-572716,
            573168-573507,573678-573900,573946-574204,574274-574481,
            574572-574622,574712-574870,574956-575120,575322-575399,
            575732-576031,576107-576259,576871-576918,577019-577188,
            577738-577852,578462-578623,578789-578893,578969-579199,
            579277-579410,579484-579738,579822-580110,580214-580306,
            580395-580520,580646-580897
          Length = 1693

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 170  PLTVVISLGIRCRDMLLTNFFITV-SKCVSCLCS 72
            P +VVI L    + M++ + F+TV   C+ CLC+
Sbjct: 1078 PQSVVIELEQDLKQMIVRHSFLTVVHACIKCLCA 1111


>01_06_1129 +
           34732007-34732091,34732814-34732934,34733012-34733083,
           34733168-34733242,34733348-34733419,34733514-34733675,
           34733780-34733854,34733932-34734003,34734089-34734160,
           34734245-34734313,34734388-34734462,34734557-34734628,
           34734732-34734866,34734946-34735415,34735490-34735648,
           34735741-34735880,34735974-34736193,34736305-34736540,
           34736627-34737130
          Length = 961

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/67 (23%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = -3

Query: 450 YWTSLFLTSYKFDNSRYGSESSPAAIFRLAKLRR-SYCNERFSGQLHSVNFVSRCARIVK 274
           ++++L   +  F +S + + + P+A+F   +L++ S     FSG+L+  + +S   R+V 
Sbjct: 307 WFSTLTSLTTLFMDSDHLTGTIPSALFSFPQLQQISLAKNSFSGELNMSSNISSLLRVVN 366

Query: 273 FHSHKFF 253
             +++ F
Sbjct: 367 LTNNQIF 373


>10_08_0373 - 17286104-17288839
          Length = 911

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 22  FTELPNR*LLHTSAIQALHRQETHLETVIKKFVKSISRHLMPNEMT 159
           F  + N+ ++  ++I A +RQ    E  +K F + I  +L+PN +T
Sbjct: 498 FRRISNKNVVTWNSILASYRQNRKPEIALKLFHEMIKSNLLPNLVT 543


>06_02_0251 -
           13478902-13478952,13478989-13479055,13479168-13479379,
           13480144-13481540,13481574-13482432,13482537-13482836
          Length = 961

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 414 DNSRYGSESSPAAIFRLAKLRRSYCNERFSGQLHSVNFVS 295
           +N+ Y  E   + I R  KL +  CN++ +   H V  VS
Sbjct: 699 ENTSYNEEPEESIIKRKIKLHQEMCNDKDAQTKHKVEGVS 738


>01_07_0240 -
           42227132-42227245,42227332-42227394,42227484-42227552,
           42227716-42227798,42228056-42228176,42228335-42228372,
           42228932-42228990,42229076-42229149,42229241-42229753
          Length = 377

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 152 SLGIRCRDMLLTNFFITVSKCVSC 81
           SL + C  +LL++FF+ VS  VSC
Sbjct: 111 SLLLHCSALLLSSFFLNVSCLVSC 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,688,758
Number of Sequences: 37544
Number of extensions: 246335
Number of successful extensions: 500
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)