Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1950
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35600-2|CAA84663.1|  394|Caenorhabditis elegans Hypothetical pr...    31   0.77 
U80443-4|AAD32268.1|  202|Caenorhabditis elegans Hypothetical pr...    31   0.77 
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    29   2.3  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    29   2.3  
U21323-11|AAA62556.1|  292|Caenorhabditis elegans Hypothetical p...    29   4.1  
U21323-8|AAA62552.1|  294|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF101305-2|AAF98594.2|  259|Caenorhabditis elegans Uncoordinated...    28   5.4  
AF098993-3|AAC67464.2|  367|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z95559-17|CAL44975.1|  331|Caenorhabditis elegans Hypothetical p...    27   9.4  

>Z35600-2|CAA84663.1|  394|Caenorhabditis elegans Hypothetical
           protein F37A8.2 protein.
          Length = 394

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 200 ITSKQCLFPYPLTVVISLGIRCRDMLLTNFFITVSKCVSCLCSACIALVCN 48
           I+S+      P  VV+     C+    +N   T+ +C   LC+AC  +V N
Sbjct: 139 ISSRSSFGGAPSPVVVKCDGPCKKEFPSNLLSTIGRCGHYLCTACFDIVKN 189


>U80443-4|AAD32268.1|  202|Caenorhabditis elegans Hypothetical
           protein C24A11.1 protein.
          Length = 202

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 137 CRDMLLTNFFITVSKCVSCLCSACIALVCN 48
           C + L TN  I + KC   LC AC  +V N
Sbjct: 74  CGNKLPTNHLIALGKCDHMLCKACFGIVKN 103


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 107  ITVSKCVSCLCSACIALVCNNYLFGSSVKVSL 12
            +T   C SC CS C +  C+N   G   K+++
Sbjct: 1982 VTAKNCSSCECSQCGSQYCDNKSGGCECKINV 2013


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 107  ITVSKCVSCLCSACIALVCNNYLFGSSVKVSL 12
            +T   C SC CS C +  C+N   G   K+++
Sbjct: 1982 VTAKNCSSCECSQCGSQYCDNKSGGCECKINV 2013


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 107  ITVSKCVSCLCSACIALVCNNYLFGSSVKVSL 12
            +T   C SC CS C +  C+N   G   K+++
Sbjct: 1982 VTAKNCSSCECSQCGSQYCDNKSGGCECKINV 2013


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 107  ITVSKCVSCLCSACIALVCNNYLFGSSVKVSL 12
            +T   C SC CS C +  C+N   G   K+++
Sbjct: 1982 VTAKNCSSCECSQCGSQYCDNKSGGCECKINV 2013


>U21323-11|AAA62556.1|  292|Caenorhabditis elegans Hypothetical
           protein C45G9.4 protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/79 (22%), Positives = 40/79 (50%)
 Frame = -3

Query: 360 KLRRSYCNERFSGQLHSVNFVSRCARIVKFHSHKFFITRLKKYNFKNV*LSKIYYIKTMF 181
           +++R Y  E++S +    +      + V + SHKFF+T+  K   +   + +  Y  ++ 
Sbjct: 190 RVQRQYTAEKYSKEDQDDDDQKDLRKSVAYPSHKFFMTQYVKDECR---VRRWVYEDSVP 246

Query: 180 VSLSANGRHLVRHKMPRYA 124
           + + +N +H++R    R A
Sbjct: 247 LMMESNMKHMLRMASNRIA 265


>U21323-8|AAA62552.1|  294|Caenorhabditis elegans Hypothetical
           protein C45G9.9 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/79 (22%), Positives = 40/79 (50%)
 Frame = -3

Query: 360 KLRRSYCNERFSGQLHSVNFVSRCARIVKFHSHKFFITRLKKYNFKNV*LSKIYYIKTMF 181
           +++R Y  E++S +    +      + V + SHKFF+T+  K   +   + +  Y  ++ 
Sbjct: 192 RVQRQYTAEKYSKEDQDDDDQKDLRKSVAYPSHKFFMTQYVKDECR---VRRWVYEDSVP 248

Query: 180 VSLSANGRHLVRHKMPRYA 124
           + + +N +H++R    R A
Sbjct: 249 LMMESNMKHMLRMASNRIA 267


>AF101305-2|AAF98594.2|  259|Caenorhabditis elegans Uncoordinated
           protein 46 protein.
          Length = 259

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 420 KFDNSRYGSESSPAAIFRLAKLRRSY-CNERFSGQLHSVNF 301
           KF  S    ES  +++   A L + Y C +R +  LHSVNF
Sbjct: 134 KFAGSSAVFESDNSSVIFSAPLTQKYVCEDRINVTLHSVNF 174


>AF098993-3|AAC67464.2|  367|Caenorhabditis elegans Hypothetical
           protein T10B11.4 protein.
          Length = 367

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 137 CRDMLLTNFFITVSKCVSCLCSACIALVCNN 45
           C+    +N   T+ +C   LC+AC  LV N+
Sbjct: 130 CQKEFPSNLLNTIGRCDHYLCTACFGLVKNS 160


>Z95559-17|CAL44975.1|  331|Caenorhabditis elegans Hypothetical
           protein Y41E3.19 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 137 CRDMLLTNFFITVSKCVSCLCSACIALVCNN 45
           C+    +N   T+ +C   LC+AC  LV N+
Sbjct: 127 CQREFPSNLLNTIGRCDHYLCTACYGLVKNS 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,438,542
Number of Sequences: 27780
Number of extensions: 248005
Number of successful extensions: 547
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)