Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1948
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    29   0.41 
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   8.8  

>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
 Frame = -2

Query: 289  QTLLPRRIIRSCMYLFWYLIFTTTVF-GIDSS----TSLHLLFSLMELECEQFKNSSIV 128
            QTL P  +I S + +F   +  T+ F  +DS     T+L  + +L ELECE   +++++
Sbjct: 1083 QTLKPATLIDSALDVFLCFVQKTSKFISLDSFNTILTALSTILNLKELECEPKDHANLI 1141


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -1

Query: 620 VDRVEQSRWKNFCSDPPTQALNTSAHSLAD*LQDKEEKNICSFRWVDTNILPQILSFLS 444
           +D   Q     FC  PP    +T    +A     K  ++I  ++ V  N L  I  FLS
Sbjct: 785 IDNAIQLFASMFCHQPPKVMESTLEIMVASVTNLKSGRDILRYKAVTANTLFSIYGFLS 843


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,664
Number of Sequences: 5004
Number of extensions: 53992
Number of successful extensions: 141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)