Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1948
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0834 - 21848064-21849752,21851121-21851850,21852617-21852705     27   9.1  
06_03_0190 - 17708513-17708548,17708897-17709295                       27   9.1  

>07_03_0834 - 21848064-21849752,21851121-21851850,21852617-21852705
          Length = 835

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 505 FFSSLSCNQSARLWADVLRAWVGGSEQKFFHRDCSTLS 618
           F  +   N + RL+  +LR W GGS + FF R+C  L+
Sbjct: 540 FRGTAPINLTERLY-QILR-WSGGSLEMFFSRNCPLLA 575


>06_03_0190 - 17708513-17708548,17708897-17709295
          Length = 144

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 7/35 (20%), Positives = 20/35 (57%)
 Frame = +3

Query: 186 CKDVLESIPKTVVVNIKYQNKYIHDLMIRRGSRVC 290
           CK  ++   +  ++N+ +  +++H  ++ RG+  C
Sbjct: 56  CKQCMDMYMRPFLLNVFFSKRFVHAKVVHRGTSEC 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,088,885
Number of Sequences: 37544
Number of extensions: 302098
Number of successful extensions: 608
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)