Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1948
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical pr...    32   0.38 
Z72502-16|CAI46573.2|  409|Caenorhabditis elegans Hypothetical p...    31   0.88 
Z70782-12|CAI46574.2|  409|Caenorhabditis elegans Hypothetical p...    31   0.88 
Z82282-10|CAB05277.2|  600|Caenorhabditis elegans Hypothetical p...    29   3.5  

>Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical
           protein DH11.3 protein.
          Length = 1270

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = -2

Query: 265 IRSCMYLFWYLIFTTTVFGIDSSTSLHLLFSLMELECEQFKNSSIVNDQFKNTTTVNLNI 86
           I +C ++ W L F T   G  S+  LHLL  + E+  E+  + S  +      + +N+  
Sbjct: 212 IIACAFINWQLTFITFTMGPVSAFVLHLLTKVNEVSNEELMSLSAQSHAIIEESILNVRT 271

Query: 85  IWS*N 71
           + S N
Sbjct: 272 VQSCN 276


>Z72502-16|CAI46573.2|  409|Caenorhabditis elegans Hypothetical
           protein C08B6.14 protein.
          Length = 409

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +2

Query: 236 IPKQIHTRSYDTSWEQSLSAVSSV*ICVPTILFNADEYLSHLFITH*LNPQRKCHLQT*N 415
           +P+Q+H   Y + W+ S+S ++       T +F      SH+ I   LNP  + + Q  +
Sbjct: 18  LPEQVHLAFYTSPWDISVSWITFENGTTNTWIFGGITRHSHVVILKNLNPSTQYYYQIDS 77

Query: 416 LRSKIHLVP 442
            +     +P
Sbjct: 78  RKFNFRTLP 86


>Z70782-12|CAI46574.2|  409|Caenorhabditis elegans Hypothetical
           protein C08B6.14 protein.
          Length = 409

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +2

Query: 236 IPKQIHTRSYDTSWEQSLSAVSSV*ICVPTILFNADEYLSHLFITH*LNPQRKCHLQT*N 415
           +P+Q+H   Y + W+ S+S ++       T +F      SH+ I   LNP  + + Q  +
Sbjct: 18  LPEQVHLAFYTSPWDISVSWITFENGTTNTWIFGGITRHSHVVILKNLNPSTQYYYQIDS 77

Query: 416 LRSKIHLVP 442
            +     +P
Sbjct: 78  RKFNFRTLP 86


>Z82282-10|CAB05277.2|  600|Caenorhabditis elegans Hypothetical
           protein T07G12.6 protein.
          Length = 600

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 135 DEFLNCSHSNSINENNKCKDVLESIPKTV 221
           DEFL  SH +  ++++  KD+LE + +TV
Sbjct: 118 DEFLENSHQSETSKDDVIKDLLEEMVQTV 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,747,211
Number of Sequences: 27780
Number of extensions: 300169
Number of successful extensions: 749
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)