Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1944
         (616 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8SYQ4 Cluster: RE42475p; n=9; Endopterygota|Rep: RE424...   179   6e-44
UniRef50_UPI0000DB7C15 Cluster: PREDICTED: similar to cysteine-r...    34   3.1  
UniRef50_UPI0000ECBADC Cluster: KIAA0284 (KIAA0284), mRNA; n=3; ...    33   5.4  
UniRef50_UPI00006CC9F6 Cluster: hypothetical protein TTHERM_0027...    32   9.4  
UniRef50_Q91TH9 Cluster: T121.1; n=1; Tupaiid herpesvirus 1|Rep:...    32   9.4  
UniRef50_Q0GET3 Cluster: PHA synthase II; n=1; uncultured Pseudo...    32   9.4  
UniRef50_Q9VZ35 Cluster: CG2081-PB, isoform B; n=2; Drosophila m...    32   9.4  
UniRef50_Q29HL3 Cluster: GA13562-PA; n=1; Drosophila pseudoobscu...    32   9.4  

>UniRef50_Q8SYQ4 Cluster: RE42475p; n=9; Endopterygota|Rep: RE42475p
           - Drosophila melanogaster (Fruit fly)
          Length = 148

 Score =  179 bits (435), Expect = 6e-44
 Identities = 75/99 (75%), Positives = 85/99 (85%)
 Frame = +2

Query: 146 KTFRRLIPADVLRDFPGMCFASTRCITVEPGNTWELSPFCGRSTCVVSEDQPPRLLELVE 325
           + F+RLIPADVLRDFPGMCFASTRC TVEPG +W+L+PFCGRSTCV +E+   +L ELVE
Sbjct: 34  RIFKRLIPADVLRDFPGMCFASTRCATVEPGKSWDLTPFCGRSTCVQNEENDAKLFELVE 93

Query: 326 DCGPLPLTNPKCQLDTEKTNKTAPFPGCCPIFTCEEGAK 442
           DCGPLPL N KC+LDTEKTNKTA FP CCPIFTC+ G K
Sbjct: 94  DCGPLPLANDKCKLDTEKTNKTASFPYCCPIFTCDPGVK 132


>UniRef50_UPI0000DB7C15 Cluster: PREDICTED: similar to cysteine-rich
           motor neuron 1, partial; n=1; Apis mellifera|Rep:
           PREDICTED: similar to cysteine-rich motor neuron 1,
           partial - Apis mellifera
          Length = 440

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
 Frame = +2

Query: 191 PGMCFASTRCITVEPGNTWELSPFCGRSTCVVS---EDQP-PRLLELVED--CGPLPLTN 352
           P  C +  R I V+P +       C R  C+ S   E +P P    L ED  C   P   
Sbjct: 26  PVECESGQRRIQVKPADPETPGSCCARYDCLPSDSRESEPCPENSVLTEDGKCECAPCPR 85

Query: 353 PKCQLDTEKTNKTAPF----PG-CCPIFTCE 430
           P CQ         A      PG CCP++ C+
Sbjct: 86  PTCQSGHRPVQVRAALDRETPGSCCPLYECK 116


>UniRef50_UPI0000ECBADC Cluster: KIAA0284 (KIAA0284), mRNA; n=3;
            Amniota|Rep: KIAA0284 (KIAA0284), mRNA - Gallus gallus
          Length = 1595

 Score = 33.1 bits (72), Expect = 5.4
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = +1

Query: 298  APQAAGACRRLRTSATH*PQVPIRYRKDQ*DRSLPWL-LPDLYLRGGRQAGVP*APHPSP 474
            AP+   A +R +   +   +  + +  D+   SLP+L +PD  +     +     P P+P
Sbjct: 1038 APRCVEATKRFQMKRSAGTRGSLDFTDDERSSSLPYLPVPDAVVSDHEHS----VPRPAP 1093

Query: 475  RRQESGGEA*SLKSKTTKSIHNPQRAMTLTKS 570
            RR+     A    SKTT ++   Q+ +T + S
Sbjct: 1094 RRKPFTQAAKEDHSKTTANVQKIQQVLTRSNS 1125


>UniRef50_UPI00006CC9F6 Cluster: hypothetical protein
           TTHERM_00277300; n=4; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00277300 - Tetrahymena
           thermophila SB210
          Length = 316

 Score = 32.3 bits (70), Expect = 9.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 142 PLLLLFSGERQSENGQYDKVFHFSRIRLTKKMC 44
           PL  L+ GE+Q   G Y   + FS+++L   MC
Sbjct: 164 PLTFLYYGEKQYYQGAYSLPYQFSQVKLPSWMC 196


>UniRef50_Q91TH9 Cluster: T121.1; n=1; Tupaiid herpesvirus 1|Rep:
           T121.1 - Tupaiid herpesvirus 1 (strain 1) (TuHV-1)
           (Herpesvirus tupaia (strain1))
          Length = 389

 Score = 32.3 bits (70), Expect = 9.4
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 247 GAVSVLRPQHLRRQRGPAPQAAGACRR-LRTSATH 348
           G  +V   +H RR+RGP P+ A A RR  R+ A H
Sbjct: 68  GESAVAERRHERRERGPPPRTASAARRSTRSPAEH 102


>UniRef50_Q0GET3 Cluster: PHA synthase II; n=1; uncultured
           Pseudomonas sp.|Rep: PHA synthase II - uncultured
           Pseudomonas sp
          Length = 147

 Score = 32.3 bits (70), Expect = 9.4
 Identities = 27/74 (36%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
 Frame = +1

Query: 214 PLHHRRARQHLGAVSVLRPQHLRRQRGPAPQAAGACRRLR-------TSATH*PQVPIRY 372
           P +HRR R         RP H R  R PA QA  A RR R             P+ P+R 
Sbjct: 44  PRNHRRPRGQPDGRLCRRPDHRRAARPPASQAPVAPRRQRQLSGEPARQPDRQPRHPVRR 103

Query: 373 RKDQ*DRSLPWLLP 414
           R +   R  P LLP
Sbjct: 104 RANPGSRQAP-LLP 116


>UniRef50_Q9VZ35 Cluster: CG2081-PB, isoform B; n=2; Drosophila
           melanogaster|Rep: CG2081-PB, isoform B - Drosophila
           melanogaster (Fruit fly)
          Length = 160

 Score = 32.3 bits (70), Expect = 9.4
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 311 LELVEDCGPLP-LTNPKCQLDTEKTNKTAPFPGCCPIFTCE 430
           L+L ED   +P LT   C      TN  A +P CCP++ C+
Sbjct: 68  LQLWEDSCQVPKLTQGNCT-PVPSTNPHAEYPRCCPLYECK 107


>UniRef50_Q29HL3 Cluster: GA13562-PA; n=1; Drosophila
           pseudoobscura|Rep: GA13562-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 93

 Score = 32.3 bits (70), Expect = 9.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 311 LELVEDCGPLPLTNPKCQLDTEKTNKTAPFPGCCPIFTC 427
           L +++ C P P   P C+L +   N    FP CCP   C
Sbjct: 57  LLMIKHCEPQPFPLPGCRLSSG--NYAVQFPECCPQLEC 93


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 488,011,148
Number of Sequences: 1657284
Number of extensions: 8280073
Number of successful extensions: 22718
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22703
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)