Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1944
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484           29   2.2  
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707...    28   5.1  
09_01_0142 - 2103224-2103864,2104264-2104399                           28   6.8  
05_07_0296 - 29061900-29061923,29062026-29062440,29062529-290625...    28   6.8  
09_04_0416 - 17399059-17399777,17400560-17400704                       27   8.9  
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751...    27   8.9  
01_07_0298 - 42586007-42589742,42590167-42590280,42590295-425904...    27   8.9  

>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
          Length = 543

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 248 ELSPFCGRSTCVVSEDQPPRLLELVEDCGPLPLTNP 355
           ++SP  GRST +VS    PR+  +    G  PL NP
Sbjct: 473 QVSPAPGRST-IVSSSNAPRIAPIRRSIGKSPLGNP 507


>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
            27771407-27771773,27772104-27772217,27772307-27772403,
            27772968-27773088,27773168-27773252,27773349-27773498,
            27773630-27773746,27773819-27773905,27773981-27774049,
            27774125-27774181,27774266-27774349,27774477-27774513,
            27774721-27774869,27776053-27776538,27776743-27776886,
            27776961-27777509,27778332-27778526,27779226-27779310,
            27779570-27779670,27779689-27780360,27781101-27781433,
            27781957-27782038,27782258-27782334,27782713-27782817,
            27783810-27783944,27784437-27785159,27785882-27786663,
            27787480-27789187
          Length = 2891

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 209  STRCITVEPGNTWELSPFCGRSTCV-VSEDQPPRLLELVEDCGPLPLTNPKCQLDTE 376
            ST  +   P  T  LSPFCGR +C+ +S D    L+      G    +N KC+  TE
Sbjct: 2739 STFTVNGLPIATTVLSPFCGRVSCIEISTDGHFALM------GTCSSSNYKCEDSTE 2789


>09_01_0142 - 2103224-2103864,2104264-2104399
          Length = 258

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 248 ELSPFCGRSTCVVSEDQPPRLLELVEDCGPLPLTNP 355
           ++SP  GR T VVS    PR+  +    G  PL NP
Sbjct: 188 QVSPAPGRPT-VVSSSNAPRIAPIRRSIGKSPLGNP 222


>05_07_0296 -
           29061900-29061923,29062026-29062440,29062529-29062566,
           29062689-29062741,29062851-29063034,29064486-29064669,
           29064761-29064916,29064998-29065173,29065277-29065454,
           29066015-29066421
          Length = 604

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 187 FPRNVLRVHPLHHRRARQHLGAVSVLRPQHLRRQRGPA 300
           FPR ++ +   + RRAR  +G + + R   LRR   P+
Sbjct: 327 FPRGMVSIVERNVRRARTAVGYLDITRLSELRRDAHPS 364


>09_04_0416 - 17399059-17399777,17400560-17400704
          Length = 287

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +1

Query: 181 KRFPRNVLRVHPLHHRRARQHLGAVSVLRPQHLRRQRGPAPQAAGACRRLR 333
           +R P+     H    R+ R+  G    +  Q  RR+ GPAP       R+R
Sbjct: 73  ERGPKEERHPHHRARRKERKRTGPAPAMAMQPPRRKTGPAPTMTTQPLRIR 123


>06_03_0635 -
           22971502-22973840,22974112-22974403,22974639-22975162,
           22975314-22975583,22976393-22977124,22977226-22977310
          Length = 1413

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 226 RRARQHLGAVSVLRPQHLRRQRGPAPQAAGACRR 327
           RR R  +G     RPQ  RRQ G A +A  A +R
Sbjct: 81  RRVRGGVGGQQGARPQRRRRQDGAAVRAGDARQR 114


>01_07_0298 -
           42586007-42589742,42590167-42590280,42590295-42590437,
           42591174-42591347
          Length = 1388

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
 Frame = +1

Query: 226 RRARQHLGAVSVLRPQHLRRQRGPAPQAAGACRRLRTSATH---*PQVPIRYRKDQ*DRS 396
           RRARQ   +  +L P   RRQR        A RR  T AT      +V  R+R +Q   S
Sbjct: 88  RRARQRRQSQRLLPPSFSRRQR----TVTAAARRTATGATQHGDGGRVGARWRAEQGRGS 143

Query: 397 LPWLLPDLYLR-GGRQAG 447
                 D+Y    GR+ G
Sbjct: 144 WGGTFTDIYAEVPGRREG 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,346,532
Number of Sequences: 37544
Number of extensions: 240679
Number of successful extensions: 735
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)