Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1944
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ512337-1|CAD54510.1|  567|Caenorhabditis elegans trehalase pro...    29   2.6  
AF039713-5|AAB96724.2|  567|Caenorhabditis elegans Trehalase pro...    29   2.6  
Z68227-18|CAA92521.1|  869|Caenorhabditis elegans Hypothetical p...    28   4.6  
Z68220-11|CAA92493.1|  869|Caenorhabditis elegans Hypothetical p...    28   4.6  
U23172-18|ABC48253.1|  915|Caenorhabditis elegans Hypothetical p...    28   4.6  
U23172-17|ABC48254.1|  923|Caenorhabditis elegans Hypothetical p...    28   4.6  

>AJ512337-1|CAD54510.1|  567|Caenorhabditis elegans trehalase
           protein.
          Length = 567

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 187 FPRNVLRVHPLHHRRARQHL 246
           FP N L +H  HHRR   HL
Sbjct: 89  FPSNFLNIHDYHHRRWALHL 108


>AF039713-5|AAB96724.2|  567|Caenorhabditis elegans Trehalase
           protein 1 protein.
          Length = 567

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 187 FPRNVLRVHPLHHRRARQHL 246
           FP N L +H  HHRR   HL
Sbjct: 89  FPSNFLNIHDYHHRRWALHL 108


>Z68227-18|CAA92521.1|  869|Caenorhabditis elegans Hypothetical
           protein F49C12.15 protein.
          Length = 869

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +1

Query: 226 RRARQHLGAVSVLRPQHLRRQRGPAPQAAGACRRLRTSATH*PQVPIRYR 375
           R AR    +   LR     R+R P+  A+ + R   TS T    +PIRYR
Sbjct: 105 RLARTRSASGGKLRRSRSARRRSPSSSASRS-RSRSTSRTRAQSIPIRYR 153


>Z68220-11|CAA92493.1|  869|Caenorhabditis elegans Hypothetical
           protein F49C12.15 protein.
          Length = 869

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +1

Query: 226 RRARQHLGAVSVLRPQHLRRQRGPAPQAAGACRRLRTSATH*PQVPIRYR 375
           R AR    +   LR     R+R P+  A+ + R   TS T    +PIRYR
Sbjct: 105 RLARTRSASGGKLRRSRSARRRSPSSSASRS-RSRSTSRTRAQSIPIRYR 153


>U23172-18|ABC48253.1|  915|Caenorhabditis elegans Hypothetical
           protein F25B5.1a protein.
          Length = 915

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 426 QVKIGQQPGKGAVLLVFSVSNWHLGL 349
           ++ I ++ G GAV LV +V +WH GL
Sbjct: 789 RLSIYEEKGNGAVDLVGTVDDWHKGL 814


>U23172-17|ABC48254.1|  923|Caenorhabditis elegans Hypothetical
           protein F25B5.1b protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 426 QVKIGQQPGKGAVLLVFSVSNWHLGL 349
           ++ I ++ G GAV LV +V +WH GL
Sbjct: 797 RLSIYEEKGNGAVDLVGTVDDWHKGL 822


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,010,981
Number of Sequences: 27780
Number of extensions: 191134
Number of successful extensions: 453
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)