Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1943
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034     30   1.6  
07_03_1273 + 25369661-25369815,25369957-25370329,25371477-253715...    27   8.8  

>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
          Length = 930

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 473 ITEIKLVFTPRKPGWHGPSIHTLLHYELKVFLV 375
           + ++ + +  R P W  PS++ L+H ELKV +V
Sbjct: 750 LKKLVIGYISRIPKWINPSMYNLVHLELKVDIV 782


>07_03_1273 +
           25369661-25369815,25369957-25370329,25371477-25371577,
           25371749-25371785
          Length = 221

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +1

Query: 421 GPCHPGFLGVKTNFISVILFGRYIMEF---STPSRRIYWIPKRRHHT 552
           GPC+P ++   T F  ++LFG  I       T ++R  WI KR  H+
Sbjct: 170 GPCYPIWISWITFFFLMMLFGALIASAGADQTSNKR--WIVKRLLHS 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,505,104
Number of Sequences: 37544
Number of extensions: 233435
Number of successful extensions: 434
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)