Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1943
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80454-6|AAB37879.1|  786|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF022983-4|AAB69944.1|  387|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z81084-5|CAI79227.1|  447|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z81084-4|CAB03109.2|  476|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical ...    28   6.0  

>U80454-6|AAB37879.1|  786|Caenorhabditis elegans Hypothetical
           protein T16A1.2 protein.
          Length = 786

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 446 PRKPGWHGPSIHTLLHYELKVFLV 375
           P K  +HGP + + ++YE+ +FL+
Sbjct: 731 PIKSTYHGPKVVSTIYYEMTIFLI 754


>AF022983-4|AAB69944.1|  387|Caenorhabditis elegans Hypothetical
           protein R13D11.4 protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 509 GVENSIIYLPKSITEIKLVFTPRKPGWHGPSIHTLLH 399
           G E +  +L  ++TEI+L   P +P WHG    T+++
Sbjct: 26  GRETNNRFLKAALTEIQLNNYPGEPKWHGLPTDTVIN 62


>Z81084-5|CAI79227.1|  447|Caenorhabditis elegans Hypothetical
           protein F46A9.3b protein.
          Length = 447

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 436 GFLGVKTNFISVILFGRYIMEFSTPSRRIYWIPKRR 543
           GF G+    I +  FGRY+   +T  RR+    +RR
Sbjct: 138 GFFGIPLTVILLTNFGRYLEAMATRFRRLISCRRRR 173


>Z81084-4|CAB03109.2|  476|Caenorhabditis elegans Hypothetical
           protein F46A9.3a protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 436 GFLGVKTNFISVILFGRYIMEFSTPSRRIYWIPKRR 543
           GF G+    I +  FGRY+   +T  RR+    +RR
Sbjct: 167 GFFGIPLTVILLTNFGRYLEAMATRFRRLISCRRRR 202


>AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical
           protein W04B5.2 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +1

Query: 454 TNFISVILF-GRYIMEF---STPSRRIYWIPKRRHHTIQSCVTLRSFRNN 591
           T+ +S  ++ GR ++ F   S+    + WIP R H++I +CV   S + +
Sbjct: 16  TDLLSFYIYPGRLVVAFCFFSSHFLLVLWIPLRDHNSIGTCVLYHSTKTS 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,513,013
Number of Sequences: 27780
Number of extensions: 236535
Number of successful extensions: 567
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)