Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1941
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   3.9  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    22   3.9  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    22   3.9  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    22   3.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   6.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   6.8  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 291 FYFCLLITITGCFVL 335
           +Y CL +TITG  V+
Sbjct: 135 YYVCLAMTITGPLVI 149


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 270 TYCRLILFYFC 302
           TYC  +LF FC
Sbjct: 290 TYCLFLLFVFC 300


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 270 TYCRLILFYFC 302
           TYC  +LF FC
Sbjct: 290 TYCLFLLFVFC 300


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 270 TYCRLILFYFC 302
           TYC  +LF FC
Sbjct: 290 TYCLFLLFVFC 300


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -1

Query: 309  LEDRSRTVLNDNKFKK*SIPLNSVS*LFSNIFYFPMFSNVYILV 178
            L D+    +++NK +K  I    +     ++F F MF+ +++LV
Sbjct: 1239 LLDKYLYPIDENKEEKARIAKELIELRNKSVFAFFMFNALFVLV 1282


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -1

Query: 309  LEDRSRTVLNDNKFKK*SIPLNSVS*LFSNIFYFPMFSNVYILV 178
            L D+    +++NK +K  I    +     ++F F MF+ +++LV
Sbjct: 1239 LLDKYLYPIDENKEEKARIAKELIELRNKSVFAFFMFNALFVLV 1282


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,789
Number of Sequences: 336
Number of extensions: 3469
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)