Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1941
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0519 + 4066776-4066892,4067042-4067099,4067322-4067608,406...    28   7.6  

>11_01_0519 +
           4066776-4066892,4067042-4067099,4067322-4067608,
           4067706-4067822,4067898-4067958,4068042-4068133,
           4068547-4068632,4068926-4068975,4069077-4069117,
           4069222-4069392,4069875-4069942,4070088-4070148,
           4070471-4070757,4072008-4072172,4072759-4072760,
           4072829-4073139,4073600-4073787,4075231-4075482,
           4076035-4076114,4076199-4076399,4076959-4077014,
           4077137-4077328
          Length = 980

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 297 FCLLITITGCFVLHNYMFINLITFGMISKKMCSFCG*KKNLPINL 431
           F L ++   CF+ ++YM +  +T G++ +  CS+      LP+N+
Sbjct: 359 FQLELSAQSCFMKNHYMIVLRLTSGILVQFWCSY----NTLPLNV 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,991,571
Number of Sequences: 37544
Number of extensions: 274915
Number of successful extensions: 381
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)