Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1941
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97000-11|AAC47993.1|  321|Caenorhabditis elegans Serpentine rec...    28   5.1  
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    28   5.1  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    28   5.1  
Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z81517-1|CAB04208.1|  520|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U97000-11|AAC47993.1|  321|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 33 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -1

Query: 135 VFFLFHWFRR*--FSTIPLLSLSRFSKVILPVTFVKAYNK 22
           VF+  H++     F  I L SL+RFS +    T+ KA+N+
Sbjct: 91  VFYFIHFYMAYAQFFLIFLTSLNRFSMIFWSATYEKAWNR 130


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 245 IQFHNYFQTYFIFQCLVMCTF 183
           ++ HNYF + F+F C+V   F
Sbjct: 1   MRLHNYFVSIFLFSCIVWTVF 21


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 245 IQFHNYFQTYFIFQCLVMCTF 183
           ++ HNYF + F+F C+V   F
Sbjct: 1   MRLHNYFVSIFLFSCIVWTVF 21


>Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical
           protein F36G9.5 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 376 FLKKCAPFVDKKKTCQ*TWAFFWTFRIFQPR 468
           FL    PF++   TC   W F+ T  IFQ +
Sbjct: 282 FLVALRPFMNDVDTCVVPWVFYLTHPIFQKK 312


>Z81517-1|CAB04208.1|  520|Caenorhabditis elegans Hypothetical
           protein F28B1.1 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 282 LILFYFCLLITITGCFVLHNYM 347
           L++ YF LL  ++GC VLH+Y+
Sbjct: 172 LLIVYF-LLQDVSGCLVLHDYL 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,524,844
Number of Sequences: 27780
Number of extensions: 300391
Number of successful extensions: 593
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)