Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1940
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0135 + 1039018-1041474                                           29   1.9  
07_01_0168 + 1179292-1180354,1180880-1180923                           28   4.3  

>06_01_0135 + 1039018-1041474
          Length = 818

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 319 DSVCRYQTPSSHINLVSPFYYRRGPCV*IDPLFVLRY*YMLISLACCLLV 170
           D+V  ++  +S IN +S +Y+   P V   P F +   ++L  +  C+ V
Sbjct: 329 DAVAVFEVMNSEINFLSEYYHSVVPVVLASPFFFVANYFLLPVVVLCVCV 378


>07_01_0168 + 1179292-1180354,1180880-1180923
          Length = 368

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 235 FIHTAHGDSKMDSRDLCAMMVFDNDR 312
           F+HT HGD +M+ + L    +++ DR
Sbjct: 316 FLHTIHGDYRMELKSLQISKLWEKDR 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,766,074
Number of Sequences: 37544
Number of extensions: 297633
Number of successful extensions: 498
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)