Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1940
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-8|CAB54342.2|  138|Caenorhabditis elegans Hypothetical ...    31   0.73 
Z81048-9|CAI79126.1|  560|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z81048-8|CAB51463.1|  602|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF039570-1|AAC00000.1|  602|Caenorhabditis elegans aryl hydrocar...    28   3.9  

>AL110478-8|CAB54342.2|  138|Caenorhabditis elegans Hypothetical
           protein Y26D4A.3 protein.
          Length = 138

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -1

Query: 488 PPVNGPLSSVTEHCIASECRL*VSDDEVWSVLKVILTWQARRLSPC---SLSCVYASC 324
           PPV+   +  TE    +E  +  S+ E     +V+++ +ARR++ C   S+SC+  SC
Sbjct: 34  PPVSPTTTPRTETLSVTESAVTFSNQECQQRNQVVISRRARRINNCRNRSISCIEWSC 91


>Z81048-9|CAI79126.1|  560|Caenorhabditis elegans Hypothetical
           protein C41G7.5b protein.
          Length = 560

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 370 PAGYRP-ALSLVFTHPALDSVCRYQTPSSHINL 275
           P G+ P A  LV  HP +     Y TPS+H +L
Sbjct: 506 PHGFTPDAQKLVPPHPQMSHFTEYPTPSTHHDL 538


>Z81048-8|CAB51463.1|  602|Caenorhabditis elegans Hypothetical
           protein C41G7.5a protein.
          Length = 602

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 370 PAGYRP-ALSLVFTHPALDSVCRYQTPSSHINL 275
           P G+ P A  LV  HP +     Y TPS+H +L
Sbjct: 548 PHGFTPDAQKLVPPHPQMSHFTEYPTPSTHHDL 580


>Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical
           protein R08D7.6c protein.
          Length = 856

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 227 RIDLYTRPTAIVKWTHEIYVR*WCLIT--TDTIKGRMRKHKRESRAIAC 367
           R+    RP     W+H   V  +C +T  TD I+  +   +R S  IAC
Sbjct: 408 RVSAGYRPVPYHNWSHAFAVTHFCWLTLRTDAIRRALSDMERLSLLIAC 456


>Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical
           protein R08D7.6b protein.
          Length = 734

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 227 RIDLYTRPTAIVKWTHEIYVR*WCLIT--TDTIKGRMRKHKRESRAIAC 367
           R+    RP     W+H   V  +C +T  TD I+  +   +R S  IAC
Sbjct: 411 RVSAGYRPVPYHNWSHAFAVTHFCWLTLRTDAIRRALSDMERLSLLIAC 459


>Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical
           protein R08D7.6a protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 227 RIDLYTRPTAIVKWTHEIYVR*WCLIT--TDTIKGRMRKHKRESRAIAC 367
           R+    RP     W+H   V  +C +T  TD I+  +   +R S  IAC
Sbjct: 411 RVSAGYRPVPYHNWSHAFAVTHFCWLTLRTDAIRRALSDMERLSLLIAC 459


>AF039570-1|AAC00000.1|  602|Caenorhabditis elegans aryl hydrocarbon
           receptor orthologAHR-1 protein.
          Length = 602

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 370 PAGYRP-ALSLVFTHPALDSVCRYQTPSSHINL 275
           P G+ P A  LV  HP +     Y TPS+H +L
Sbjct: 548 PHGFTPDAQKLVPPHPQMSHFTEYPTPSTHHDL 580


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,972,168
Number of Sequences: 27780
Number of extensions: 270121
Number of successful extensions: 527
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)