Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1940
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   0.39 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   0.39 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.51 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   6.3  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 267 HFTIAVGRVYKSILCLSFVTNTCLYLW 187
           HF I +  +Y  +L +S V N C+ +W
Sbjct: 55  HFHIGLAIIYSMLLIMSLVGNCCV-IW 80


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 267 HFTIAVGRVYKSILCLSFVTNTCLYLW 187
           HF I +  +Y  +L +S V N C+ +W
Sbjct: 55  HFHIGLAIIYSMLLIMSLVGNCCV-IW 80


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 379 VKITFNTLHT-SSSDTYSLHS 438
           VKI F TLHT  SSDT  + S
Sbjct: 329 VKIKFETLHTMDSSDTIDIDS 349



 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 117 CDCENIKSQTVHHIENRNT 173
           CD   IK +T+H +++ +T
Sbjct: 326 CDSVKIKFETLHTMDSSDT 344


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 461 HWIGDH 478
           HWIGDH
Sbjct: 119 HWIGDH 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,237
Number of Sequences: 438
Number of extensions: 3349
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)