Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1939
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    28   1.1  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    25   6.1  
SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   6.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   6.1  

>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 419 KTFQAYLPPAHRTYSCIHCRAHLASHDELISKV 517
           K F   +  A R Y  +HC   L   D+L++KV
Sbjct: 177 KQFSFQINLAERDYKVVHCHPPLPHVDDLVNKV 209


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 347 DGVTNRGGVAGESGGGTPAVKTPVKTFQ 430
           DGV  RG VA   G G P   TP   F+
Sbjct: 308 DGVATRGIVAPTEGLGKPEEITPADIFK 335


>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 86  KNSYFTQYTVLKVLFCCDPRSDLVSTYIFPRLKIT 190
           KNS      + ++LFC +P+S  +  ++FP + I+
Sbjct: 36  KNSLENDTQLPQILFCINPKS--IRNFLFPPIAIS 68


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 318 ASSIHPPPT*AASTVGHLPRALSPR 244
           ASS  P    A +TVGH P   SP+
Sbjct: 688 ASSAEPIRRPATTTVGHTPNLYSPK 712


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,868,399
Number of Sequences: 5004
Number of extensions: 28707
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)