Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1939
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0058 - 19688221-19688448,19688899-19688949,19689061-19689153 37 0.010
12_02_0358 - 17948460-17948687,17949442-17949534 36 0.031
09_02_0376 + 8140260-8140811,8141390-8141464,8141542-8141598,814... 32 0.29
12_01_0857 - 8043765-8043839,8044215-8044497,8044578-8044748,804... 30 1.5
09_04_0010 - 13686424-13686822 29 2.7
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 29 2.7
03_05_0798 + 27798095-27798190,27798325-27798366,27799152-277991... 29 2.7
01_06_1212 + 35459675-35460073 29 2.7
08_02_1485 - 27466761-27467753 28 4.7
08_01_0101 + 725972-726200,726407-726675,726927-727049,727742-72... 28 4.7
09_06_0129 - 21028528-21028575,21029559-21029654,21029989-210300... 28 6.2
09_04_0109 - 14674980-14675004,14675861-14676468 28 6.2
01_03_0114 - 12649104-12649141,12650137-12650245,12650500-126506... 28 6.2
03_04_0144 + 17677975-17678520,17679600-17679632 27 8.2
01_06_1488 + 37716986-37717076,37717424-37717558,37717755-377178... 27 8.2
>11_06_0058 - 19688221-19688448,19688899-19688949,19689061-19689153
Length = 123
Score = 37.1 bits (82), Expect = 0.010
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 452 RTYSCIHCRAHLASHDELISK 514
R YSC HCR H+ HD++ISK
Sbjct: 8 RVYSCCHCRNHVCLHDDIISK 28
>12_02_0358 - 17948460-17948687,17949442-17949534
Length = 106
Score = 35.5 bits (78), Expect = 0.031
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 452 RTYSCIHCRAHLASHDELISKVVSRQVGGA 541
R YSC +CR H+ HD++ISK + G A
Sbjct: 8 RVYSCCNCRNHVCLHDDIISKAFQGRNGRA 37
>09_02_0376 +
8140260-8140811,8141390-8141464,8141542-8141598,
8142645-8142833
Length = 290
Score = 32.3 bits (70), Expect = 0.29
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Frame = +2
Query: 293 VGGGWMLLAPGS*QAL---MRDGVTNRGGVAG----ESGGGTPAVKTPVKTFQAYLPPAH 451
+ GG LLAPG+ A + D +T GG + GG PA + P +FQ+ L A
Sbjct: 135 ISGGARLLAPGTSSAAAVRLWDSITASGGGGAWWDADEGGRAPAAEAPPVSFQSILSYAP 194
Query: 452 RTY 460
T+
Sbjct: 195 YTF 197
>12_01_0857 -
8043765-8043839,8044215-8044497,8044578-8044748,
8044826-8045670,8045828-8046262,8046339-8046563,
8046700-8046781,8046814-8047067
Length = 789
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/44 (40%), Positives = 19/44 (43%)
Frame = -2
Query: 318 ASSIHPPPT*AASTVGHLPRALSPRPARFLLAPATLFWHSGERV 187
A S PPPT TV LP A+ R L T FW G V
Sbjct: 426 APSSRPPPTHPHQTVVSLPPAVEQRDEDLQLQYDTDFWDDGMEV 469
>09_04_0010 - 13686424-13686822
Length = 132
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = -2
Query: 321 GASSIHPPPT*AASTVGHLPRALSPRPARFLLAPATLFWH---SGERV--ILRRGNIYVE 157
G +HPPP S H P L R +++ + W SG R+ +LRR ++V
Sbjct: 64 GRCLLHPPPQGRRSPHLHHPELLGTRSGLYVVRDHRI-WSPPCSGHRLLRLLRRRRLFVY 122
Query: 156 TKSERGS 136
+ +E GS
Sbjct: 123 SATELGS 129
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/72 (31%), Positives = 31/72 (43%)
Frame = +2
Query: 299 GGWMLLAPGS*QALMRDGVTNRGGVAGESGGGTPAVKTPVKTFQAYLPPAHRTYSCIHCR 478
GGW G Q RDG+ +GG E GGGT V Q +L A I
Sbjct: 256 GGW-----GGGQGGSRDGM-GKGGEREERGGGTHTRWPAVLAGQLWLRTADAVEDTITAS 309
Query: 479 AHLASHDELISK 514
L+ + +L+S+
Sbjct: 310 RPLSGNQKLVSR 321
>03_05_0798 +
27798095-27798190,27798325-27798366,27799152-27799190,
27799238-27799420
Length = 119
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 452 RTYSCIHCRAHLASHDELISK 514
+ YSC HC HL ++ISK
Sbjct: 12 KVYSCKHCHTHLGLSSDIISK 32
>01_06_1212 + 35459675-35460073
Length = 132
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = -2
Query: 321 GASSIHPPPT*AASTVGHLPRALSPRPARFLLAPATLFWH---SGERV--ILRRGNIYVE 157
G +HPPP S H P L R +++ + W SG R+ +LRR ++V
Sbjct: 64 GRCLLHPPPQGRRSPHLHHPELLGTRSGLYVVRDHRI-WSPPCSGHRLLRLLRRRRLFVY 122
Query: 156 TKSERGS 136
+ +E GS
Sbjct: 123 SATELGS 129
>08_02_1485 - 27466761-27467753
Length = 330
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -2
Query: 270 HLPRALSPRPARFLLAPATLFWHSGERVILRRGNIYVETKSE 145
+LP SP P P L++H G V+ G+++ E
Sbjct: 64 YLPNPASPPPPPTSKLPVILYFHGGGFVLFSTGSVFYHASCE 105
>08_01_0101 +
725972-726200,726407-726675,726927-727049,727742-728248
Length = 375
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 365 GGVAGESGGGTPAVKTPVKT 424
GG GE GGG P TP+ T
Sbjct: 355 GGEVGEQGGGVPVQPTPLPT 374
>09_06_0129 -
21028528-21028575,21029559-21029654,21029989-21030070,
21030394-21030472,21030946-21031042,21031506-21031593,
21033326-21033687
Length = 283
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 344 RDGVTNRGGVAGESGGGTPAVKTPVKTFQAYLPPAHRT 457
R G++ GGVAG+ TP TP PP +RT
Sbjct: 49 RIGISPSGGVAGDEAAETP---TPSAAVPEEAPPRNRT 83
>09_04_0109 - 14674980-14675004,14675861-14676468
Length = 210
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -2
Query: 324 PGASSIHPPPT*AASTVGHLPRA 256
PG +HPPPT AAS H PR+
Sbjct: 62 PGRCLLHPPPTVAASFT-HRPRS 83
>01_03_0114 -
12649104-12649141,12650137-12650245,12650500-12650691,
12650797-12650904,12650986-12651162,12652331-12652459,
12653314-12653589,12653667-12653916,12654909-12655561
Length = 643
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2
Query: 327 LPGASSIHPPPT*AASTVGHLPRALSPRPARFLLAPAT 214
LPG S ++PPP A ST H R L P R P T
Sbjct: 46 LPGLSRLYPPP--ANSTAHHSWRLLRPLLLRSDALPGT 81
>03_04_0144 + 17677975-17678520,17679600-17679632
Length = 192
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +2
Query: 284 AAHVGGGWMLLAPGS*QALMRDGVTNRGGVAGESGGGTPAVK 409
A GGG + G + + DGV RG V E GGG AV+
Sbjct: 10 AVEDGGGGRAVEDGVGRGAVEDGVVGRGMV--EDGGGGRAVE 49
>01_06_1488 +
37716986-37717076,37717424-37717558,37717755-37717831,
37717934-37718181,37718503-37718559,37718665-37718800,
37718944-37719001,37719110-37719195,37719270-37719326,
37719537-37719557,37720553-37720954,37721500-37721647,
37721940-37722036,37724065-37724202,37724496-37724598,
37724792-37724828,37724905-37725014,37725141-37725164
Length = 674
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 345 RMSAC*LPGASSIHPPPT*AASTVGHLPRA 256
RM AC + GA+++ P A +T H P+A
Sbjct: 330 RMEACPVNGATAVRTGPASAPNTDSHKPKA 359
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,850,312
Number of Sequences: 37544
Number of extensions: 256288
Number of successful extensions: 958
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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