Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1939
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35600-4|CAB54236.1|  137|Caenorhabditis elegans Hypothetical pr...    56   2e-08
Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical pr...    30   1.0  
U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger pro...    27   7.4  
L23645-6|AAO91714.1|  635|Caenorhabditis elegans Zinc finger pro...    27   7.4  
L23645-4|AAK26137.1|  867|Caenorhabditis elegans Zinc finger pro...    27   7.4  
Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z46787-15|CAO78702.1|  829|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z35596-1|CAO78712.1|  829|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z35600-4|CAB54236.1|  137|Caenorhabditis elegans Hypothetical
           protein F37A8.5 protein.
          Length = 137

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 26/41 (63%), Positives = 28/41 (68%)
 Frame = +2

Query: 419 KTFQAYLPPAHRTYSCIHCRAHLASHDELISKVVSRQVGGA 541
           KTFQ YLP   R YSCIHCRA+LA+H ELISK      G A
Sbjct: 21  KTFQHYLPAGDRCYSCIHCRANLAAHAELISKSFQGSQGKA 61


>Z49867-1|CAA90027.1|  312|Caenorhabditis elegans Hypothetical
           protein C33D3.3 protein.
          Length = 312

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 398 PAVKTPVKTFQAYLPPAHRTYSCIHCRAHLASH 496
           PA   PV+      PP H    C HC A + SH
Sbjct: 115 PATMPPVQNKLPSTPPEHVCEKCSHCTAIICSH 147


>U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 839

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +2

Query: 395 TPAVKTPVKTFQAYLPPAHRTYSCIHCRAHLASHDELISKVVSRQVGGARI 547
           T A  TP+    + LPP+  T    HC   L       + +   Q+G + +
Sbjct: 325 TTASATPIMANGSTLPPSSETTVGTHCLQQLQIQSAAAAAITQNQIGPSEL 375


>L23645-6|AAO91714.1|  635|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform c protein.
          Length = 635

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +2

Query: 395 TPAVKTPVKTFQAYLPPAHRTYSCIHCRAHLASHDELISKVVSRQVGGARI 547
           T A  TP+    + LPP+  T    HC   L       + +   Q+G + +
Sbjct: 93  TTASATPIMANGSTLPPSSETTVGTHCLQQLQIQSAAAAAITQNQIGPSEL 143


>L23645-4|AAK26137.1|  867|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform a protein.
          Length = 867

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +2

Query: 395 TPAVKTPVKTFQAYLPPAHRTYSCIHCRAHLASHDELISKVVSRQVGGARI 547
           T A  TP+    + LPP+  T    HC   L       + +   Q+G + +
Sbjct: 325 TTASATPIMANGSTLPPSSETTVGTHCLQQLQIQSAAAAAITQNQIGPSEL 375


>Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical
           protein C53A5.2 protein.
          Length = 1150

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 207 WHSGERVILRRGNIYVETKSERGSQQNNTLSTVYCVKY 94
           W++  +V+ R+G++YV   SE  ++Q+     V  + Y
Sbjct: 322 WNNAVKVLTRQGSVYVPNCSEVPNEQSVGALAVQLIDY 359


>Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical
           protein C53A5.2 protein.
          Length = 1150

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 207 WHSGERVILRRGNIYVETKSERGSQQNNTLSTVYCVKY 94
           W++  +V+ R+G++YV   SE  ++Q+     V  + Y
Sbjct: 322 WNNAVKVLTRQGSVYVPNCSEVPNEQSVGALAVQLIDY 359


>Z46787-15|CAO78702.1|  829|Caenorhabditis elegans Hypothetical
           protein C30D11.1a protein.
          Length = 829

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 356 TNRGGVAGESGGGT 397
           TNRGGV+G  GGG+
Sbjct: 42  TNRGGVSGTGGGGS 55


>Z35596-1|CAO78712.1|  829|Caenorhabditis elegans Hypothetical
           protein C30D11.1a protein.
          Length = 829

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 356 TNRGGVAGESGGGT 397
           TNRGGV+G  GGG+
Sbjct: 42  TNRGGVSGTGGGGS 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,850,287
Number of Sequences: 27780
Number of extensions: 184517
Number of successful extensions: 560
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)