Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1938
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   1.5  
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    27   2.0  
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    27   2.0  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.7  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    26   4.7  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   8.2  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    25   8.2  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -1

Query: 549  HYRANWVTGPPLERP*RQQA--RSTSQLRV*RGRSMRRWLEHREQSMSRKMVI 397
            H  AN V   P E   +  A  +STSQ R  RG+S+   L  R+ SMS K+ I
Sbjct: 1920 HIIANVVASYPGETLWQLMATIKSTSQKRSLRGKSILNVLHSRKLSMSSKVDI 1972


>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -1

Query: 453 SMRRWLEHREQSMSRKMVIHERL--WTSKKILRKQLEKWSWSQPEMQHKRTMVQWRTNML 280
           ++ +++E R++ M  ++  +ERL  W    I R+  E+ S    E+Q  R + +W    L
Sbjct: 48  ALEKYIEERDRKMKYEIECNERLQGWKKLAIEREISEEQS---GEVQFPRWIDEWANTKL 104

Query: 279 G 277
           G
Sbjct: 105 G 105


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -1

Query: 453 SMRRWLEHREQSMSRKMVIHERL--WTSKKILRKQLEKWSWSQPEMQHKRTMVQWRTNML 280
           ++ +++E R++ M  ++  +ERL  W    I R+  E+ S    E+Q  R + +W    L
Sbjct: 48  ALEKYIEERDRKMKYEIECNERLQGWKKLAIEREISEEQS---GEVQFPRWIDEWANTKL 104

Query: 279 G 277
           G
Sbjct: 105 G 105


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +3

Query: 417 YSAHGAPAIAAYSAHATPAVAT---YSAPVVAKDARGGARLPNSPYNESYYN 563
           +S +  P  ++YSA  T +VA+   YS P  A  +     L N+   + Y N
Sbjct: 138 FSCNSFPEYSSYSASETSSVASYSYYSGPNPATPSSSSCNLVNANSLDIYLN 189


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -1

Query: 195 RRQRCGHRERCELSKKRPKTQLD*WF*LPQQEPR*CGCKPREQLRGDHQRGLRLQRTEQR 16
           RRQ  GH +  +L  ++   QL     L Q  P     +PR QL    Q  L ++  + +
Sbjct: 68  RRQLQGHAQSGQLPNQQLLQQLQSNGALQQGTPEPSNTRPRPQLNAQEQTMLLVRHRQLQ 127

Query: 15  SA 10
           +A
Sbjct: 128 TA 129


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -1

Query: 375 KKILRKQLEKWSWSQPEMQ--HKRTMVQWRTNMLGQ*HMSMLVQQHKRR 235
           K +L+ QL K   SQ      H+R  + W+ N+       ML Q H+ +
Sbjct: 331 KLLLQPQLPKKEDSQRSFADTHQRNSLAWKFNISNDPAYEMLKQNHQSK 379


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 387 LWTSKKILRKQLEKWSWSQP 328
           LWT +KI+    E +SW  P
Sbjct: 102 LWTDEKIMSFMNENYSWFMP 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,716,472
Number of Sequences: 5004
Number of extensions: 29372
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)