Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1938
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0505 - 34397054-34397087,34397127-34397474,34397650-343977...    30   1.6  
01_01_0840 - 6557931-6558377                                           28   4.8  
07_03_1777 + 29442542-29442652,29443394-29443455,29443540-294436...    27   8.4  
06_01_0569 + 4019254-4021996,4022121-4022272,4022356-4022427,402...    27   8.4  
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965...    27   8.4  

>03_06_0505 -
           34397054-34397087,34397127-34397474,34397650-34397757,
           34397847-34398161,34399027-34399442,34399531-34400946
          Length = 878

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 63  RGDHQRGLRLQRTEQRSAWC 4
           RGD QR LRL +  QR +WC
Sbjct: 111 RGDWQRSLRLFKYMQRQSWC 130


>01_01_0840 - 6557931-6558377
          Length = 148

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 195 RRQRCGHRERCEL 157
           RR RCGHR RC L
Sbjct: 54  RRPRCGHRRRCHL 66


>07_03_1777 +
           29442542-29442652,29443394-29443455,29443540-29443681,
           29444043-29444261,29444374-29444440,29444883-29445288,
           29445669-29445816,29445903-29446063,29446320-29446419,
           29446522-29446596,29446677-29446811,29446921-29447013,
           29447475-29447657,29447738-29447842,29448614-29448772,
           29449142-29449186,29449296-29449517,29449775-29449881,
           29449971-29450027,29450132-29450213,29450291-29450455
          Length = 947

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 360 KQLEKWSWSQPEMQHKRTMVQW 295
           K LE+WS +     H++ +VQW
Sbjct: 343 KDLEEWSENPESFHHEQNLVQW 364


>06_01_0569 +
           4019254-4021996,4022121-4022272,4022356-4022427,
           4022521-4022673,4022749-4022912,4022990-4023137,
           4023530-4023652,4023774-4023861,4023951-4024129
          Length = 1273

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 411 ATYS-AHGAPAIAAYSAHATPAVATYS 488
           A+Y+ +H  P +A+Y+ H  P VA+Y+
Sbjct: 283 ASYAPSHQPPQVASYAPHQQPQVASYA 309


>03_02_0584 -
           9650996-9651488,9651630-9652049,9652129-9652158,
           9652201-9652287,9652657-9653669,9653832-9654854,
           9654946-9654969
          Length = 1029

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 414 TYSAHGAPAIAAYSAHATPAVATYSAPVVAKDA-RGGARLPNS 539
           T +A  +PA A+ S+  +P +AT   P+  +DA R G R+  S
Sbjct: 445 TTAAIPSPATASVSSRCSPLMATKQLPLGDRDASRAGLRVSAS 487


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,335,242
Number of Sequences: 37544
Number of extensions: 239482
Number of successful extensions: 884
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)