Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1938
(588 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110485-14|CAB60362.1| 109|Caenorhabditis elegans Hypothetical... 30 1.4
Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z81529-3|CAB04300.1| 224|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z81529-1|CAB04294.1| 224|Caenorhabditis elegans Hypothetical pr... 28 5.7
AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical ... 28 5.7
Z29094-14|CAJ43434.1| 893|Caenorhabditis elegans Hypothetical p... 27 9.9
Z29094-10|CAD45580.2| 965|Caenorhabditis elegans Hypothetical p... 27 9.9
Z29094-9|CAA82347.3| 960|Caenorhabditis elegans Hypothetical pr... 27 9.9
AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like ... 27 9.9
>AL110485-14|CAB60362.1| 109|Caenorhabditis elegans Hypothetical
protein Y46G5A.20 protein.
Length = 109
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -2
Query: 125 DGFSYHSRSRDSVAVSQGSSSEETTSADYAYSAQSNDQLG 6
D F H+ R S + S SSS T+S+ + S++S+DQ+G
Sbjct: 28 DSFPRHAPRRRSSS-SSSSSSSSTSSSSSSNSSESDDQVG 66
>Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical
protein W09G3.6 protein.
Length = 1125
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 270 HMSMLVQQHKRRQEQQWS**RLEQHRRQRCGH 175
+M M+ ++ +R+Q++ W RL QH ++ H
Sbjct: 685 NMGMISEEMRRKQDEMWLDLRLTQHIKKHSSH 716
>Z81529-3|CAB04300.1| 224|Caenorhabditis elegans Hypothetical
protein F35E8.4 protein.
Length = 224
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +2
Query: 275 WPSIFVRHCTIVRLCCISGCDQDHFSSCF--LSIFLLVHNRSWITIFRDILCSRCSSHRR 448
W ++ + C C G D + C LSI L V + ++ + C RCS+
Sbjct: 115 WRTVIAQDCPSACGFCNEGGCVDAITDCGDDLSICLNVKMQDFVNQYCQKTCKRCSAATT 174
Query: 449 ILRPRYTRSCDV 484
+ P T +C V
Sbjct: 175 V-APPVTNNCTV 185
>Z81529-1|CAB04294.1| 224|Caenorhabditis elegans Hypothetical
protein F35E8.1 protein.
Length = 224
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +2
Query: 275 WPSIFVRHCTIVRLCCISGCDQDHFSSCF--LSIFLLVHNRSWITIFRDILCSRCSSHRR 448
W ++ + C C G D + C LSI L V + ++ + C RCS+
Sbjct: 115 WRTVIAQDCPSACGFCNEGGCVDAITDCGDDLSICLNVKMQDFVNQYCQKTCKRCSAATT 174
Query: 449 ILRPRYTRSCDV 484
+ P T +C V
Sbjct: 175 V-APPVTNNCTV 185
>AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical
protein T21D12.11 protein.
Length = 709
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 207 LEQHRRQRCGHRERCELSKKRP 142
+E HRR+RC ++RC + + P
Sbjct: 320 VECHRRRRCSRKQRCHTTTQPP 341
>Z29094-14|CAJ43434.1| 893|Caenorhabditis elegans Hypothetical
protein C07A9.3c protein.
Length = 893
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -1
Query: 333 QPEMQHKRTMVQWRTNMLGQ*HMSMLVQQHKRRQEQQWS**RLEQHR 193
Q +MQ ++ Q + NM H + Q H +Q+QQ+ + + H+
Sbjct: 85 QMQMQQQQQHHQQQYNMSYHNHQQQMQQMHYHQQQQQYQQQQAQHHQ 131
>Z29094-10|CAD45580.2| 965|Caenorhabditis elegans Hypothetical
protein C07A9.3b protein.
Length = 965
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -1
Query: 333 QPEMQHKRTMVQWRTNMLGQ*HMSMLVQQHKRRQEQQWS**RLEQHR 193
Q +MQ ++ Q + NM H + Q H +Q+QQ+ + + H+
Sbjct: 152 QMQMQQQQQHHQQQYNMSYHNHQQQMQQMHYHQQQQQYQQQQAQHHQ 198
>Z29094-9|CAA82347.3| 960|Caenorhabditis elegans Hypothetical
protein C07A9.3a protein.
Length = 960
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -1
Query: 333 QPEMQHKRTMVQWRTNMLGQ*HMSMLVQQHKRRQEQQWS**RLEQHR 193
Q +MQ ++ Q + NM H + Q H +Q+QQ+ + + H+
Sbjct: 152 QMQMQQQQQHHQQQYNMSYHNHQQQMQQMHYHQQQQQYQQQQAQHHQ 198
>AY450852-1|AAR18092.1| 960|Caenorhabditis elegans Tousled-like
kinase protein.
Length = 960
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -1
Query: 333 QPEMQHKRTMVQWRTNMLGQ*HMSMLVQQHKRRQEQQWS**RLEQHR 193
Q +MQ ++ Q + NM H + Q H +Q+QQ+ + + H+
Sbjct: 152 QMQMQQQQQHHQQQYNMSYHNHQQQMQQMHYHQQQQQYQQQQAQHHQ 198
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,850,546
Number of Sequences: 27780
Number of extensions: 184805
Number of successful extensions: 659
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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