Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1935
(505 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy... 31 0.13
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 27 1.2
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 1.2
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 2.8
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 26 3.7
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 4.9
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa... 25 6.5
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po... 25 8.5
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 25 8.5
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 25 8.5
>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 30.7 bits (66), Expect = 0.13
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 474 FPFGELFLKTLVACRCLLLPASSILPPRFHH 382
FPFG + +++C+CL++PA+ + F H
Sbjct: 242 FPFGPMQCILVISCQCLIVPATFTIIDSFIH 272
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 407 PFY--HRGSTTAAHQCHELRWRSKTPRTSFAKRVQT*SYLF 291
P Y H+G TT+AH + W K P+ K ++ + LF
Sbjct: 331 PIYNLHKGKTTSAHGSAYIEWEVKFPKKLKGKFLKDLNNLF 371
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.5 bits (58), Expect = 1.2
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = -2
Query: 117 GYTMVWNVKRIKFVLGYFVYYLPLRSTTISIQS 19
G ++W++ R +FV VY LP+++ ++ ++
Sbjct: 2364 GNLIIWDLNRAEFVSSLSVYKLPIQTIAVNARN 2396
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -1
Query: 373 ISVTNSVGGPKLRGRRLLNESKHSRIYFPYCREPLFQLYL 254
+S + + P+L + + NE+ + R+YF +C Q +L
Sbjct: 1357 LSASTVIAVPELYQKGINNEAFNWRVYFGWCSIAFIQAFL 1396
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 3.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 94 YVPHHGVPKFLLGV*IPKKRNNIFS 168
Y HH +P F+ + IP K N+ FS
Sbjct: 317 YSMHHFIPSFISLLKIPLKTNDAFS 341
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 334 GRRLLNESKHSRIYFPYCREPLFQLYLRVKFLV 236
G+R N+S ++F Y E QLY ++KFL+
Sbjct: 1332 GKRCCNKSCRGSVHFEYNDE---QLYNQIKFLL 1361
>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 440
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 302 TMFGLV*QTTSSEFWTANGVRDTDEQRWWNRG 397
T +V S+ W A +RD D+ +W +G
Sbjct: 31 TFRSMVPSGASTGEWEAKELRDNDKNKWGGKG 62
>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 24.6 bits (51), Expect = 8.5
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +1
Query: 49 WKVVHEVA*YKFNAFYVPHHGVPKFLLGV 135
W + + + N + + HHGV F+LG+
Sbjct: 55 WHNLINIRLHTLNTYPLVHHGVISFILGL 83
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 24.6 bits (51), Expect = 8.5
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 469 IWRALLEDSSGLSLLVTARVVHSTTAVPPPLLISVTNSVG 350
I R LLE +GL LL H +A P LIS + G
Sbjct: 412 ITRNLLEKCNGLDLLPERSHKHRHSAPPRSKLISSKSEAG 451
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 24.6 bits (51), Expect = 8.5
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +3
Query: 57 STRSSLIQI*CVLRSTPWCTQVFVRCINTKKK 152
++ SSL++ +L S+ W +++RC + K K
Sbjct: 314 NSSSSLMEKDAILSSSSWSQLLYLRCSSCKLK 345
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,229,515
Number of Sequences: 5004
Number of extensions: 45530
Number of successful extensions: 138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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