Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1935
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0621 - 4981070-4981136,4982906-4983825                           30   1.2  
05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,535...    28   4.9  
03_06_0141 - 31955782-31956801                                         28   4.9  
12_02_1175 + 26702744-26704507                                         27   6.5  
08_01_0898 - 8856146-8856566,8857607-8857811,8858776-8858820,886...    27   6.5  
03_06_0135 + 31928838-31929698,31929783-31929932,31930795-319310...    27   6.5  
03_03_0260 - 15946321-15946431,15946651-15946716,15947601-15947891     27   8.6  

>11_01_0621 - 4981070-4981136,4982906-4983825
          Length = 328

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 374 EQRWWNRGGRMDDAGSNKQRQAT 442
           E+ WW++GG   +AG++ +  +T
Sbjct: 250 EEEWWSKGGEFSEAGTSSRTSST 272


>05_01_0595 +
           5344721-5345249,5349183-5349264,5349813-5350507,
           5350583-5350839,5350934-5351615,5351689-5351892,
           5351981-5352715,5352799-5353181
          Length = 1188

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 426 LLLPASSILPPRFHHRCSSVSRTPLAVQ 343
           LL PAS  +PP  H R    SR P+  +
Sbjct: 25  LLCPASVGVPPAVHRRAGGCSRAPVRAE 52


>03_06_0141 - 31955782-31956801
          Length = 339

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 428 ACYCPRRPFYHRGSTTAAHQCHE 360
           AC CP       GST   H CHE
Sbjct: 8   ACVCPNEVTTSTGSTGDLHACHE 30


>12_02_1175 + 26702744-26704507
          Length = 587

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 412 VVHSTTAVPPPLLISVTNS-VGGPKLRGRRLLNESKHSRIYFP 287
           VV    A PPPL +S ++     P+   RRL+ +  HS +Y P
Sbjct: 305 VVDDDDASPPPLPVSSSSKPTSAPRTFARRLV-DLLHSPLYLP 346


>08_01_0898 -
           8856146-8856566,8857607-8857811,8858776-8858820,
           8860204-8860608,8861175-8861298
          Length = 399

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = -1

Query: 478 DLSIWRALLEDSSGLSLLVTARVVHSTTAVPPPLLISVTNSVGGPKLRGRRLLNESKHSR 299
           D+ IW  +L    G SL+VTA+  +S   +  P LIS        +L+ R   N+     
Sbjct: 222 DIIIWGYILRMRGG-SLMVTAQYGYSFAPIYNPKLISWGGVWTADRLQARNWQNQ----- 275

Query: 298 IYFPYCR-EPLFQLYL 254
           +  P CR EP   ++L
Sbjct: 276 VICPLCRAEPETAVHL 291


>03_06_0135 +
           31928838-31929698,31929783-31929932,31930795-31931065,
           31931157-31931249,31931442-31931616,31931715-31931960,
           31932100-31932294,31932604-31932802
          Length = 729

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 306 CLDSFSKRRPRSFGPPTEFVTLMSSGGGTAVVEWTTRAVTSSDRPLESSR 455
           CL  + +R P  FG     VT+  + G +  + WT+ + TSS + + + R
Sbjct: 17  CLGCWRRRPPLGFGAK---VTIAIALGLSFAIVWTSLSPTSSSQQISTER 63


>03_03_0260 - 15946321-15946431,15946651-15946716,15947601-15947891
          Length = 155

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 383 TAAHQCHELRWRSKTPR 333
           TAAHQ H  RWRS  P+
Sbjct: 37  TAAHQAHCGRWRSSGPQ 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,162,763
Number of Sequences: 37544
Number of extensions: 290047
Number of successful extensions: 805
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)