Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1935
(505 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41023-3|AAA82342.2| 435|Caenorhabditis elegans Arrestin family... 48 3e-06
U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical pr... 27 5.8
AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interfere... 27 5.8
Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z82271-5|CAI46599.1| 378|Caenorhabditis elegans Hypothetical pr... 27 7.7
AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like ... 27 7.7
>U41023-3|AAA82342.2| 435|Caenorhabditis elegans Arrestin family
protein 1 protein.
Length = 435
Score = 48.4 bits (110), Expect = 3e-06
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +2
Query: 428 QRQATRVFKKSSPNGKITVYLGKRDF 505
++ TRVFKK+SPNGKIT YLGKRDF
Sbjct: 6 KKSGTRVFKKTSPNGKITTYLGKRDF 31
>U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical
protein F13H8.2 protein.
Length = 929
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +3
Query: 366 TLMSSGGGTAVVEWTTRAVTSS 431
+L++SGGG V+ W+T ++ SS
Sbjct: 422 SLLASGGGNEVIVWSTHSLRSS 443
>Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical
protein K08H10.7 protein.
Length = 1020
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 34 SGTTKWKVVHEVA*YKFNAFYVPHHGV 114
SGTT K++ V+ YKF+ F HHGV
Sbjct: 899 SGTTVDKLI--VSKYKFDFFLASHHGV 923
>AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interference
promoting factorRDE-1 protein.
Length = 1020
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 34 SGTTKWKVVHEVA*YKFNAFYVPHHGV 114
SGTT K++ V+ YKF+ F HHGV
Sbjct: 899 SGTTVDKLI--VSKYKFDFFLASHHGV 923
>Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical protein
T01G1.1c protein.
Length = 1580
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 380 RWWNRGGRMDDAGSNKQRQATRVFKKSSPNGKITVYLGKRD 502
R W GR++ A + + + + + +P G I Y G RD
Sbjct: 1395 REWKPLGRLNAASHSPKSEVSCLRTTMTPEGSILAYTGSRD 1435
>Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical protein
T01G1.1a protein.
Length = 1605
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 380 RWWNRGGRMDDAGSNKQRQATRVFKKSSPNGKITVYLGKRD 502
R W GR++ A + + + + + +P G I Y G RD
Sbjct: 1420 REWKPLGRLNAASHSPKSEVSCLRTTMTPEGSILAYTGSRD 1460
>Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical protein
T01G1.1c protein.
Length = 1580
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 380 RWWNRGGRMDDAGSNKQRQATRVFKKSSPNGKITVYLGKRD 502
R W GR++ A + + + + + +P G I Y G RD
Sbjct: 1395 REWKPLGRLNAASHSPKSEVSCLRTTMTPEGSILAYTGSRD 1435
>Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical protein
T01G1.1a protein.
Length = 1605
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 380 RWWNRGGRMDDAGSNKQRQATRVFKKSSPNGKITVYLGKRD 502
R W GR++ A + + + + + +P G I Y G RD
Sbjct: 1420 REWKPLGRLNAASHSPKSEVSCLRTTMTPEGSILAYTGSRD 1460
>Z82271-5|CAI46599.1| 378|Caenorhabditis elegans Hypothetical
protein T01G1.1b protein.
Length = 378
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 380 RWWNRGGRMDDAGSNKQRQATRVFKKSSPNGKITVYLGKRD 502
R W GR++ A + + + + + +P G I Y G RD
Sbjct: 193 REWKPLGRLNAASHSPKSEVSCLRTTMTPEGSILAYTGSRD 233
>AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like
protein KLP-12 protein.
Length = 1609
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 380 RWWNRGGRMDDAGSNKQRQATRVFKKSSPNGKITVYLGKRD 502
R W GR++ A + + + + + +P G I Y G RD
Sbjct: 1424 REWKPLGRLNAASHSPKSEVSCLRTTMTPEGSILAYTGSRD 1464
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,233,085
Number of Sequences: 27780
Number of extensions: 253127
Number of successful extensions: 718
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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