Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1933
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    27   2.3  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   4.1  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    25   5.4  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   5.4  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   7.2  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   7.2  
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    25   9.5  

>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +1

Query: 13  LFTIMSKPNV---LTRILDAIAETNTKVDSVQTQLNGLEESFQPLDGLPAQLTDFNT 174
           LF I++K N+          I   + K   + +Q   L E +QP   +PAQLT ++T
Sbjct: 61  LFQILTKTNLGNPANYPFATIDPVHAKAPVLDSQYELLCEIYQPKTRIPAQLTIYDT 117


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 525 ICSRSMNKKNNNFNQIIMGLFATNTIVAFTAFVIHKQL 412
           +C+ S   K N F Q+ M LFA   ++A  A   H  L
Sbjct: 4   VCASSSKCKRNTFLQLAMVLFA--VVMARIALYFHNHL 39


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 401 IKNMSCLCITNAVNATIV 454
           +KN+ C CITN V+  I+
Sbjct: 667 LKNLLCCCITNLVSLAIL 684


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 70  ETNTKVDSVQTQLNGLEESFQPLDGLPAQLTDFNTKISEIQSIL 201
           E N ++ S   Q + + ESF     L    T+++  +S +QSIL
Sbjct: 371 ENNIQISSEYLQQHLIGESFDGNISLEPNSTEWDDDVSALQSIL 414


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 315 LKKRWNCVYHDERLNRIQK 259
           +K  W  V+HDE+LN ++K
Sbjct: 337 IKNSWK-VFHDEKLNELKK 354


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 305 RFFKITNQLFYNIRTIL*LCNKM*SLGRLPKNIKNMSCLCITNAVNATIVFV 460
           ++   +N+L+  I   L  CN   SL  L K IKN   L  +   N TI F+
Sbjct: 33  QYIPFSNRLYEIISIALNPCNFSKSLFWLRKKIKNSVLLKTSFDSNETIFFL 84


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = -1

Query: 431 LLYTNNSYFLYFSVIFLMITFYYIVKESYGYYKTID 324
           L+    +Y ++F ++ ++I++Y+I   + GY+   D
Sbjct: 193 LVAYEGTYGVFFVLLGMIISYYFIGSTTAGYHGWFD 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,471
Number of Sequences: 5004
Number of extensions: 43149
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)