Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1933
         (539 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28015| Best HMM Match : 7tm_1 (HMM E-Value=0.056)                   29   3.2  
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)        28   5.6  
SB_20373| Best HMM Match : RDD (HMM E-Value=6.8e-12)                   28   5.6  
SB_53761| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_57479| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   7.4  
SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)           27   7.4  
SB_35002| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_28015| Best HMM Match : 7tm_1 (HMM E-Value=0.056)
          Length = 239

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 461 QQTQLWRLQHLLYTNNSYFLYFSVIFLMITFYYIVKESYGYY 336
           +QT+L    ++ Y   SYFL+ S +  + TF+ I   S G Y
Sbjct: 102 KQTKL--AMNIAYIVGSYFLFNSPVLFVTTFHQIASGSLGTY 141


>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
          Length = 1292

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 88  DSVQTQLNGLEESFQPLDGLPAQLTDFNTKISEIQSIL 201
           D +Q   + L ++   +D L AQL +   KISE+ S+L
Sbjct: 803 DEMQKASSELLDTKSTMDALRAQLVEKQNKISELDSLL 840


>SB_20373| Best HMM Match : RDD (HMM E-Value=6.8e-12)
          Length = 434

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 461 QQTQLWRLQHLLYTNNSYFLYFSVIFLMITFYY 363
           Q  +LW      Y   SY+ Y+  I    T+YY
Sbjct: 165 QNNELWNSMSYWYYMQSYYQYYYSISYFYTYYY 197


>SB_53761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 225 RIRSSVTGQYGLNF*DFSVKISQLSGQTVQRLE 127
           R+R+S+  QY   F  F  +I +  G TVQ+ +
Sbjct: 314 RLRASILEQYVKGFVAFGCEIQKFGGYTVQKFQ 346


>SB_57479| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 939

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 407 FLYFSVIFLMITFYYIVKESYGYYKT 330
           F+YF V++LM  F  I+ +S+   KT
Sbjct: 778 FMYFIVMYLMNMFLAIINDSFSEVKT 803


>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
          Length = 2040

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/67 (23%), Positives = 36/67 (53%)
 Frame = +1

Query: 1   VNYILFTIMSKPNVLTRILDAIAETNTKVDSVQTQLNGLEESFQPLDGLPAQLTDFNTKI 180
           +N  +  + +K + L   ++ +   NTKV+   T++N L      L+   A++ D NTK+
Sbjct: 363 LNTKVHDLNAKVHDLNTKVNDLNTKNTKVNDQNTKVNDLNTKVHDLN---AKVHDLNTKV 419

Query: 181 SEIQSIL 201
            ++ +++
Sbjct: 420 HDLNTMV 426


>SB_35002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 907

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 443 RLQHLLYTNNSYFLYFSVIFLMITFYYIVKESYGYYK-TIDLLF*KNDGTAFTT 285
           R+ + +   N Y+ +FS +    TFY I ++   + + T DL+   N+   FTT
Sbjct: 557 RVVYFIGVVNIYWGFFSTVVACCTFYVICQDMINHIEHTTDLII--NNARDFTT 608


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,305,245
Number of Sequences: 59808
Number of extensions: 283399
Number of successful extensions: 665
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)