Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1933
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80842-17|AAB37953.1|  155|Caenorhabditis elegans Hypothetical p...    29   1.6  
Z92972-3|CAB07488.1|  317|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    28   3.7  
Z81122-12|CAB03359.1|  235|Caenorhabditis elegans Hypothetical p...    28   4.9  
U66405-1|AAB48388.1|  235|Caenorhabditis elegans caveolin-1 prot...    28   4.9  
AF016420-2|AAB65306.1|  291|Caenorhabditis elegans Serpentine re...    27   6.5  
U80842-18|AAU20826.1|  132|Caenorhabditis elegans Hypothetical p...    27   8.6  

>U80842-17|AAB37953.1|  155|Caenorhabditis elegans Hypothetical
           protein ZC239.16 protein.
          Length = 155

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 413 SYFLYFSVIFLMITFYYIVKESYGYY 336
           S+F  FS+IFL++ F Y +    GY+
Sbjct: 119 SWFFVFSIIFLVLVFVYYMPALKGYF 144


>Z92972-3|CAB07488.1|  317|Caenorhabditis elegans Hypothetical
           protein T19C9.3 protein.
          Length = 317

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 495 NNFNQIIMGLFAT-NTIVAFTAFVIHKQLIFFIFFGN 388
           NNF  I+   F T +T+V    +  +++  F +FFGN
Sbjct: 267 NNFITIMFSSFGTGSTVVMIVVYKPYRRFTFSVFFGN 303


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +1

Query: 4    NYILFTIMSKPNVLTRILDAIAETNTKVDSVQTQLNGLEESFQPLDGLPAQLTD 165
            N +L  I  K N L +  D IAET+ KV+ ++     +      LD LPA+  D
Sbjct: 2720 NKLLAKIDEKLNSLPK--DQIAETHRKVEDIKVTKADIVAQIDVLDKLPAKDID 2771


>Z81122-12|CAB03359.1|  235|Caenorhabditis elegans Hypothetical
           protein T13F2.8 protein.
          Length = 235

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 449 LWRLQHLLYTNNSYFLYFSVIFLMITFYYIVKESYGYYKTIDL 321
           +WRL H ++T    F+Y  V  L + F  I    +G   +I++
Sbjct: 134 VWRLNHTVFTAVRLFIYRLVSLLALPFTIIFAIFFGLLASINV 176


>U66405-1|AAB48388.1|  235|Caenorhabditis elegans caveolin-1
           protein.
          Length = 235

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 449 LWRLQHLLYTNNSYFLYFSVIFLMITFYYIVKESYGYYKTIDL 321
           +WRL H ++T    F+Y  V  L + F  I    +G   +I++
Sbjct: 134 VWRLNHTVFTAVRLFIYRLVSLLALPFTIIFAIFFGLLASINV 176


>AF016420-2|AAB65306.1|  291|Caenorhabditis elegans Serpentine
           receptor, class sx protein12 protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 431 LLYTNNSYFLYFSVIFLMITFYYIVKESYGYYKT-IDLLF*KNDGTAFTTTS 279
           L Y N + + YFS  F+ +  Y      YGY  T  D++   N   AF  TS
Sbjct: 111 LFYRNLANWKYFSSCFIFVFLYSSTVILYGYLTTNDDIIHACNPLFAFALTS 162


>U80842-18|AAU20826.1|  132|Caenorhabditis elegans Hypothetical
           protein ZC239.17 protein.
          Length = 132

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 419 NNSY--FLYFSVIFLMITFYYIVKESY 345
           NNSY  F  FS+IFL+  +Y    +SY
Sbjct: 94  NNSYTRFFVFSLIFLVFVYYIPALKSY 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,844,130
Number of Sequences: 27780
Number of extensions: 236812
Number of successful extensions: 647
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)