Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1932
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    27   1.0  
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    25   3.2  
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    24   7.3  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    24   9.7  

>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 142 IDSFIRKLSAVFTNQTYLYTASKLDYS 62
           I S   KL   F NQTY +  S+LD S
Sbjct: 75  ISSLDNKLPIPFMNQTYAFLESRLDMS 101


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +1

Query: 310 NYYTLCILS---RFGNVPLLLISVSVLFVH 390
           N  TLC LS   R+G V  LL+++ V FV+
Sbjct: 165 NGSTLCFLSTALRYGKVAGLLLTLEVFFVY 194


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 259 IRAVTQQLKINKLGFA*NYYTLCILSRFGN 348
           + +V Q LK+N    + N Y LC  +R G+
Sbjct: 38  LSSVDQPLKVNTCSESGNQYLLCDFNRDGD 67


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 308 ETTTHSVYLVDSEMCHCCSFQYR 376
           E T   +Y++   MCH   FQ R
Sbjct: 136 EITGAKIYIMHRSMCHDIDFQLR 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,450,909
Number of Sequences: 5004
Number of extensions: 25557
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)