Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1932
         (392 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0702 - 22278513-22278751,22279054-22279889,22279932-222799...    29   1.8  
03_06_0158 + 32052426-32052529,32052645-32052702,32052847-320529...    27   5.4  
02_05_1042 + 33718988-33720112,33720709-33721305,33721862-337222...    26   9.4  

>12_02_0702 -
           22278513-22278751,22279054-22279889,22279932-22279975,
           22280350-22280463
          Length = 410

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 160 NIYYCQIDSFIRKLSAVFTNQTYLYTASKLD 68
           N  YC  D F RKL  +FTN      +S+ D
Sbjct: 373 NFPYCTYDGFKRKLRGLFTNGALCIHSSQYD 403


>03_06_0158 +
           32052426-32052529,32052645-32052702,32052847-32052983,
           32053824-32053899,32053965-32054017,32054415-32054896,
           32055097-32055184,32055482-32055665,32056443-32056640,
           32057351-32057534,32057982-32058109,32058236-32058317,
           32058444-32058496,32058625-32058700,32059253-32059314
          Length = 654

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
 Frame = -3

Query: 357 QWHISESTKYTECVVV------SCKT*FINFELLSDSPNFIKAIHSIKRV 226
           QWH S  TK+  C+ +      S     ++    S+SP+  + IH +K++
Sbjct: 311 QWHFSSETKFATCLALLEGNTSSQPYCLLSVNKKSNSPSKEEGIHCLKKI 360


>02_05_1042 +
           33718988-33720112,33720709-33721305,33721862-33722223,
           33722383-33722683,33723149-33723271,33723535-33723990,
           33724102-33724602
          Length = 1154

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 273 SDSPNFIKAIHSIKRVRRR*TLH*QIQGLTE*FVHR 166
           S  P +I+A H       R TLH +I  LTE  +HR
Sbjct: 771 SSDPCYIEAYHLADPTDGRITLHLKILNLTELELHR 806


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,033,420
Number of Sequences: 37544
Number of extensions: 123824
Number of successful extensions: 162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)