Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1930
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   1.8  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   3.1  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   4.1  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    25   5.4  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    24   9.4  

>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 306 NNKSCCNRTRVKRNSMFYSAYNLISAKF 223
           + KSC     ++R  MF+  +NLI  +F
Sbjct: 530 DGKSCLQMPLIERRRMFFEHFNLIPNRF 557


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 74  IKAMSKESEACLCSSELHKIFTAALRRTDRP 166
           I  +S+   A LC + +HKI  A+L  TD P
Sbjct: 757 IAELSQSDVATLCLTNMHKIL-ASLLTTDHP 786


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 165 PARSITRKTKTLHVVYDSDRTSLRLSYTQNKTYCFV 272
           PA++ +RKT+ +H + D+D ++   SY  +  + F+
Sbjct: 309 PAQA-SRKTQKIHYINDNDPSNSYSSYQHSHVHDFI 343


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 168 QGLSVRRKAAVNILCNSLEHRQASLSLDIAFMR 70
           QGL+  + +  N+LC ++EH    + +  AF++
Sbjct: 249 QGLNCEKGSIGNLLCFAVEHVNNHVEITDAFLK 281


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 3    KRLQRSLIRKCKNVNHNTTPT 65
            K L RS+I+  +  +HNT+P+
Sbjct: 1134 KLLARSVIQSLEKTSHNTSPS 1154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,803,350
Number of Sequences: 5004
Number of extensions: 32835
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)