Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1930
         (451 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0740 + 19850745-19851254                                         28   3.0  
07_03_0023 + 12575213-12575800                                         27   7.0  
07_01_0357 - 2628077-2628176,2628268-2628298,2628399-2628657           27   9.2  
03_05_0842 + 28110940-28111141,28111451-28111879,28112034-281128...    27   9.2  

>09_04_0740 + 19850745-19851254
          Length = 169

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 264 CFVSLWFCYNSFY 302
           CF +LWFCY+ +Y
Sbjct: 26  CFDALWFCYSPYY 38


>07_03_0023 + 12575213-12575800
          Length = 195

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 141 RLYVVRTDPARSITRKTKT-LHVVYDSDRTSLRLSYTQNKTYCFVSLWF 284
           RL++ R      +   T T LHV+ + +  ++ + YT+++  C   LWF
Sbjct: 23  RLFMPRRRTTAMVDGATSTGLHVITNIENRAISMWYTRSRVSC--ELWF 69


>07_01_0357 - 2628077-2628176,2628268-2628298,2628399-2628657
          Length = 129

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -2

Query: 333 FSLLFQQKGNNKSCCN----RTRVKRNSMFYSAYNLIS 232
           F++ +QQ GN+   CN     T +KRN  F S   L S
Sbjct: 59  FNIFYQQNGNSDIACNFGGAGTIIKRNPSFGSCKFLAS 96


>03_05_0842 +
           28110940-28111141,28111451-28111879,28112034-28112806,
           28114046-28114237,28115116-28115277,28115395-28115861,
           28116339-28116384,28116639-28116647
          Length = 759

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 149 RRTDRPCEKYYSKN*DITRCLRLGSNFAEIKLYA 250
           RR D  C++ + +   +TRC  +GS+   + LY+
Sbjct: 251 RRIDEACDQNHGE--PMTRCSAMGSSVTAVSLYS 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,589,128
Number of Sequences: 37544
Number of extensions: 202572
Number of successful extensions: 442
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)