Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1930
(451 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha... 31 0.29
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha... 31 0.29
U10401-1|AAA19058.1| 131|Caenorhabditis elegans Hypothetical pr... 30 0.89
AF000197-5|AAB52900.3| 579|Caenorhabditis elegans Hypothetical ... 29 1.6
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 28 3.6
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 28 3.6
U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protei... 28 3.6
Z81484-2|CAB03970.2| 334|Caenorhabditis elegans Hypothetical pr... 27 4.8
AB275891-1|BAF34314.1| 334|Caenorhabditis elegans D-aspartate o... 27 4.8
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr... 27 6.3
AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein. 27 6.3
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein. 27 6.3
AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ... 27 6.3
Z99102-1|CAB11776.1| 523|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical pr... 27 8.3
U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protei... 27 8.3
U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protei... 27 8.3
U50301-12|AAB37053.2| 486|Caenorhabditis elegans Hypothetical p... 27 8.3
U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protei... 27 8.3
U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protei... 27 8.3
U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protei... 27 8.3
U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protei... 27 8.3
AF022976-7|AAC69086.1| 441|Caenorhabditis elegans Hypothetical ... 27 8.3
>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase
2 protein.
Length = 1668
Score = 31.5 bits (68), Expect = 0.29
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 234 RLSYTQNKTYCFVSLW-FCYNSFYCFLSV 317
RLS ++KTY FVSLW C CFL +
Sbjct: 340 RLSERRSKTYAFVSLWKICIYVVCCFLFI 368
>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
protein 2 protein.
Length = 1668
Score = 31.5 bits (68), Expect = 0.29
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 234 RLSYTQNKTYCFVSLW-FCYNSFYCFLSV 317
RLS ++KTY FVSLW C CFL +
Sbjct: 340 RLSERRSKTYAFVSLWKICIYVVCCFLFI 368
>U10401-1|AAA19058.1| 131|Caenorhabditis elegans Hypothetical
protein T20B12.5 protein.
Length = 131
Score = 29.9 bits (64), Expect = 0.89
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = +3
Query: 126 IRYLLRLY----VVRTDPARSITRKTKTLHVVYDSDRTSLRLSYTQNKTYCFVSLW-FCY 290
I Y+LR++ V++T P RSI + + HV + L +++ YC + F Y
Sbjct: 11 ILYVLRIFRTQMVIQTSPVRSIYQNLRIHHVFQIREILLLHMAHEVLHFYCCLGFSPFFY 70
Query: 291 NSFYCFLSVEI 323
NS + V I
Sbjct: 71 NSRFLQFKVSI 81
>AF000197-5|AAB52900.3| 579|Caenorhabditis elegans Hypothetical
protein T21G5.1 protein.
Length = 579
Score = 29.1 bits (62), Expect = 1.6
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = -1
Query: 370 RANWVPGPPSSLVFSIISTERKQ*KLL*QNQSETKQYVLFCV*LNLSEVRSES*TTCNVL 191
RA W+ +++ I + L + T +YVL C L + S++ T N+L
Sbjct: 179 RATWIIPHEDVILYRKIGSGAFGEVFLARMVDPTSEYVLDCAVKKLKQADSQTLTNFNIL 238
Query: 190 VFRVILLAGSVR 155
F VI+ G R
Sbjct: 239 NFLVIVFWGCSR 250
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 27.9 bits (59), Expect = 3.6
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = -2
Query: 291 CNRTRVKRNSMFYSAYN---LISAKFDPSRKQRVMS*FFE*YFSQGLSVRRKAAVNIL 127
C+R+ V + S+ + A +I AKF S R+M+ +E + GL + KA N++
Sbjct: 782 CDRSVVAKESIMWLAKRYGPVICAKFISSNVLRIMASCYEAFEMVGLEQQPKAVFNVV 839
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 27.9 bits (59), Expect = 3.6
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = -2
Query: 291 CNRTRVKRNSMFYSAYN---LISAKFDPSRKQRVMS*FFE*YFSQGLSVRRKAAVNIL 127
C+R+ V + S+ + A +I AKF S R+M+ +E + GL + KA N++
Sbjct: 782 CDRSVVAKESIMWLAKRYGPVICAKFISSNVLRIMASCYEAFEMVGLEQQPKAVFNVV 839
>U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protein
169 protein.
Length = 300
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 141 AVNILCNSLEHRQASLSLDIAFMRSRSG 58
A IL N ++H Q+ + ++ F RSRSG
Sbjct: 35 AAPILYNYMQHMQSVMQSEVDFCRSRSG 62
>Z81484-2|CAB03970.2| 334|Caenorhabditis elegans Hypothetical
protein C47A10.5 protein.
Length = 334
Score = 27.5 bits (58), Expect = 4.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 356 YPIRPIVSRITIHWPSFYNVRDW 424
YPIR +V + HW +N +D+
Sbjct: 196 YPIRGVVLDVEAHWHKHFNYKDF 218
>AB275891-1|BAF34314.1| 334|Caenorhabditis elegans D-aspartate
oxidase protein.
Length = 334
Score = 27.5 bits (58), Expect = 4.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 356 YPIRPIVSRITIHWPSFYNVRDW 424
YPIR +V + HW +N +D+
Sbjct: 196 YPIRGVVLDVEAHWHKHFNYKDF 218
>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
F22E10.2 protein.
Length = 1324
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 222 RTSLRLSYTQNKTYCFVSLWFCYNSFYCF-LSVEIIEK 332
RT LR S + YC + Y S +CF L++ II +
Sbjct: 979 RTELRKSVYEAVNYCISQNFMYYMSCFCFALAIRIINQ 1016
>Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical protein
C09D8.1b protein.
Length = 1467
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 142 GFTSYGQTLREVLLEK--LRHYTLFTTRIELR*D*VIRRIKH 261
G +YG + LLE L HYT+ T R+++ + +R IKH
Sbjct: 1030 GTATYGD-IEVTLLESVHLAHYTMRTMRLKMVGEPEVREIKH 1070
>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 142 GFTSYGQTLREVLLEK--LRHYTLFTTRIELR*D*VIRRIKH 261
G +YG + LLE L HYT+ T R+++ + +R IKH
Sbjct: 1743 GTATYGD-IEVTLLESVHLAHYTMRTMRLKMVGEPEVREIKH 1783
>Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical
protein C09D8.1c protein.
Length = 1216
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 142 GFTSYGQTLREVLLEK--LRHYTLFTTRIELR*D*VIRRIKH 261
G +YG + LLE L HYT+ T R+++ + +R IKH
Sbjct: 779 GTATYGD-IEVTLLESVHLAHYTMRTMRLKMVGEPEVREIKH 819
>Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical protein
C09D8.1b protein.
Length = 1467
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 142 GFTSYGQTLREVLLEK--LRHYTLFTTRIELR*D*VIRRIKH 261
G +YG + LLE L HYT+ T R+++ + +R IKH
Sbjct: 1030 GTATYGD-IEVTLLESVHLAHYTMRTMRLKMVGEPEVREIKH 1070
>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 142 GFTSYGQTLREVLLEK--LRHYTLFTTRIELR*D*VIRRIKH 261
G +YG + LLE L HYT+ T R+++ + +R IKH
Sbjct: 1743 GTATYGD-IEVTLLESVHLAHYTMRTMRLKMVGEPEVREIKH 1783
>AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.
Length = 1487
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 142 GFTSYGQTLREVLLEK--LRHYTLFTTRIELR*D*VIRRIKH 261
G +YG + LLE L HYT+ T R+++ + +R IKH
Sbjct: 1050 GTATYGD-IEVTLLESVHLAHYTMRTMRLKMVGEPEVREIKH 1090
>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
Length = 2200
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 142 GFTSYGQTLREVLLEK--LRHYTLFTTRIELR*D*VIRRIKH 261
G +YG + LLE L HYT+ T R+++ + +R IKH
Sbjct: 1763 GTATYGD-IEVTLLESVHLAHYTMRTMRLKMVGEPEVREIKH 1803
>AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical
protein C44E4.7 protein.
Length = 1145
Score = 27.1 bits (57), Expect = 6.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 119 ELHKIFTAALRRTDRPCEKYYSKN*DITRCLRLGSNFAEI 238
ELH+ F L + EK+ SK+ I C++L FA+I
Sbjct: 212 ELHRKFYDGLPGVNVIFEKFMSKSHKIELCMKLLDEFAKI 251
>Z99102-1|CAB11776.1| 523|Caenorhabditis elegans Hypothetical
protein B0331.2 protein.
Length = 523
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +3
Query: 165 PARSITRKT-KTLHVVYDSDRTSLR-LSYTQNKTYCFVSLWFCYNSFYCFLSVEIIEKTK 338
P +T+K TL ++ S + + T N +++W CY S Y F + E + T+
Sbjct: 348 PEDRLTKKVFNTLQIISSSMLSFTHGANDTGNTIAPLLAIWLCYESGYAFGNAETRDDTQ 407
Query: 339 L 341
+
Sbjct: 408 M 408
>Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical
protein C44C10.1 protein.
Length = 300
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 141 AVNILCNSLEHRQASLSLDIAFMRSRSG 58
A +L N ++H Q+ + ++ F RSRSG
Sbjct: 35 AAPMLYNYMQHMQSVMQSEVDFCRSRSG 62
>U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protein
166, isoform b protein.
Length = 301
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 141 AVNILCNSLEHRQASLSLDIAFMRSRSG 58
A +L N ++H Q+ + ++ F RSRSG
Sbjct: 35 AAPMLYNYMQHMQSVMQSEVDFCRSRSG 62
>U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protein
166, isoform a protein.
Length = 363
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 141 AVNILCNSLEHRQASLSLDIAFMRSRSG 58
A +L N ++H Q+ + ++ F RSRSG
Sbjct: 97 AAPMLYNYMQHMQSVMQSEVDFCRSRSG 124
>U50301-12|AAB37053.2| 486|Caenorhabditis elegans Hypothetical
protein F20D6.10 protein.
Length = 486
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 327 LLFQQKGNNKSCCNRTRVKRNSMFYSAYNLISA 229
L +QK N++CCN +K + F I A
Sbjct: 22 LAVRQKNFNRTCCNMCHIKLGAAFLGVIEAIIA 54
>U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protein
171 protein.
Length = 307
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 141 AVNILCNSLEHRQASLSLDIAFMRSRSG 58
A +L N ++H Q+ + ++ F RSRSG
Sbjct: 43 AAPMLYNYMQHMQSVMQSEVDFCRSRSG 70
>U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protein
170 protein.
Length = 300
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 141 AVNILCNSLEHRQASLSLDIAFMRSRSG 58
A +L N ++H Q+ + ++ F RSRSG
Sbjct: 35 AAPMLYNYMQHMQSVMQSEVDFCRSRSG 62
>U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protein
168 protein.
Length = 301
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 141 AVNILCNSLEHRQASLSLDIAFMRSRSG 58
A +L N ++H Q+ + ++ F RSRSG
Sbjct: 35 AAPMLYNYMQHMQSVMQSEVDFCRSRSG 62
>U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protein
167 protein.
Length = 301
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 141 AVNILCNSLEHRQASLSLDIAFMRSRSG 58
A +L N ++H Q+ + ++ F RSRSG
Sbjct: 35 AAPMLYNYMQHMQSVMQSEVDFCRSRSG 62
>AF022976-7|AAC69086.1| 441|Caenorhabditis elegans Hypothetical
protein R11G11.12 protein.
Length = 441
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -1
Query: 418 TYVVKRRPVNCNTT--HYRANWVPGPPSS 338
T+ V RR V + T H+ ANW+ G PS+
Sbjct: 234 THAVTRRGVMMDMTNVHFDANWLSGYPSA 262
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,067,219
Number of Sequences: 27780
Number of extensions: 185060
Number of successful extensions: 453
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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