Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1930
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.17 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   3.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   4.7  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   4.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.2  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +3

Query: 27  RKCKNVNHNTTPT*TS*RQCPKRAKPACAQVNYI-RYLLRLYVVRTDPARSITRKTKTLH 203
           ++C+   ++T       R+CP+R +P CA    I      L+        S+T+      
Sbjct: 91  KECELSPNSTIAVCVCMRKCPRRHRPVCASNGKIYANHCELHRAACHSGSSLTKSRLMRC 150

Query: 204 VVYDSDRTSLRLSYTQNKT 260
           + +D +   +R +   N+T
Sbjct: 151 LHHDIENAHIRRTLHMNRT 169


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 148 TSY--GQTLREVLLEKLRHYTLFTTRIELR*D*VIRRIKHTVSFHSGSV 288
           TSY  G  L +   + + HY L+T    LR   V+++   T+   + +V
Sbjct: 443 TSYKSGLNLEQEKKDSISHYHLYTNLTALRKRDVLKKGNFTIEILNKTV 491


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 406 KRRPVNCNTTHYRANWVPGP 347
           K++P +C+T  YR   V  P
Sbjct: 565 KKQPSDCDTLEYRNGEVTTP 584


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 180 TRKTKTLHVVYDSDRTSL 233
           TRKT+ + VVY++    L
Sbjct: 73  TRKTRIIDVVYNASNNEL 90


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -2

Query: 168 QGLSVRRKAAVNILCNSLEHRQASLSLDIAFMR 70
           + L +R +  V+      EH++   S+D+  +R
Sbjct: 155 EALKIREEIRVDPFRTGFEHKRQPTSIDLNAVR 187


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -2

Query: 168 QGLSVRRKAAVNILCNSLEHRQASLSLDIAFMR 70
           + L +R +  V+      EH++   S+D+  +R
Sbjct: 155 EALKIREEIRVDPFRTGFEHKRQPTSIDLNAVR 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,181
Number of Sequences: 438
Number of extensions: 2373
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)