Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1929
         (490 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000051A8D7 Cluster: PREDICTED: similar to Rho GTPase...    52   5e-06
UniRef50_Q9VTU3 Cluster: CG6811-PA; n=2; Diptera|Rep: CG6811-PA ...    38   0.091
UniRef50_A7RZ35 Cluster: Predicted protein; n=1; Nematostella ve...    33   3.4  
UniRef50_Q0TWP6 Cluster: Putative uncharacterized protein; n=1; ...    33   4.5  
UniRef50_A3HT83 Cluster: Superfamily I DNA and RNA helicases-lik...    32   7.9  

>UniRef50_UPI000051A8D7 Cluster: PREDICTED: similar to Rho GTPase
           activating protein 1; n=3; Endopterygota|Rep: PREDICTED:
           similar to Rho GTPase activating protein 1 - Apis
           mellifera
          Length = 496

 Score = 52.4 bits (120), Expect = 5e-06
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
 Frame = +2

Query: 224 MDPEHQPKLNPVRAFQ--------VLHGCNGETEENYTSLSEYHDYEPSLEFDDSEL 370
           M+ ++QP LNP R            +     E E+ Y SLS+YHDYEP+LEFDD+EL
Sbjct: 1   MEADYQPTLNPTRTLTDNNAHTSVCIIAIANEVEDPYPSLSDYHDYEPNLEFDDTEL 57


>UniRef50_Q9VTU3 Cluster: CG6811-PA; n=2; Diptera|Rep: CG6811-PA -
           Drosophila melanogaster (Fruit fly)
          Length = 476

 Score = 38.3 bits (85), Expect = 0.091
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +2

Query: 296 TEENYTSLSEYHDYEPSLEFDDSELI 373
           ++E   SLS+ HD+EP LEFDD+EL+
Sbjct: 23  SDEPQPSLSDLHDFEPKLEFDDTELL 48


>UniRef50_A7RZ35 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 662

 Score = 33.1 bits (72), Expect = 3.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 373 DQFRVIKFKAWFIVMVLRKTSVIFLCFPITTM*NLKGPDRIKF 245
           DQF ++    W + + L +T  +   +P+TT+ N +  DR +F
Sbjct: 153 DQFCLLHISRWGVTLALERTRAVLAQWPLTTIRNYESMDRGEF 195


>UniRef50_Q0TWP6 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 526

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = -3

Query: 446 WLFYLKVLVECLAAPVAMVLDQVHGSIQSHQIQGLVHSHGTQKD*CNFPLFPHYNHVEL 270
           W  YL  L  C+A   A   + V GSI ++  QG ++ +GT KD     L  +  H+ L
Sbjct: 41  WRLYLSGLGACIAGLYAGYANSVIGSIVAN--QGFINQYGTVKDPATGKLALNATHIAL 97


>UniRef50_A3HT83 Cluster: Superfamily I DNA and RNA helicases-like
           protein; n=1; Algoriphagus sp. PR1|Rep: Superfamily I
           DNA and RNA helicases-like protein - Algoriphagus sp.
           PR1
          Length = 841

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +3

Query: 132 ARRDIVYAYEVTANCLISRNHNCIDLFDDSKWTRNINPNLI 254
           A+++++ +Y  TA+ L     +C DLF + +W  ++N +LI
Sbjct: 707 AKKELIVSYNKTASSLFD---SCKDLFTEDRWVDHVNIDLI 744


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 449,645,907
Number of Sequences: 1657284
Number of extensions: 8073869
Number of successful extensions: 17903
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17899
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)