Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1929
         (490 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   6.0  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   6.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.9  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   7.9  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 287 NGETEENYTSLSEYHDYEPSLEFDDSELI 373
           +G   + YT    ++DY P ++    EL+
Sbjct: 477 HGGVCDPYTPWHTFYDYRPWVQHGHQELV 505


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 33  TYLSKNGGGGS 1
           TY++K  GGGS
Sbjct: 286 TYINKEAGGGS 296


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 230 PEHQPKLNPV 259
           P HQP  NPV
Sbjct: 741 PHHQPPRNPV 750


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 230 PEHQPKLNPV 259
           P HQP  NPV
Sbjct: 633 PHHQPPRNPV 642


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 135 RRDIVYAYEVTANCLISR 188
           R+D+ YA     NC+I +
Sbjct: 115 RKDLSYACREEKNCIIDK 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,785
Number of Sequences: 336
Number of extensions: 2252
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)