Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1929
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    25   4.6  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   6.1  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    25   8.1  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    25   8.1  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    25   8.1  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   8.1  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    25   8.1  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    25   8.1  

>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 233 EHQPKLNPVRAFQVLHGCNGETEENYTSLSEYHDYEPSLEFDDSEL 370
           + Q   NP      L G NGE E  +TS  +  +   S E D++ +
Sbjct: 430 DFQANSNPFEDDDKLEGANGEMEVTFTSGFDVDNNANSSEKDETTI 475


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 117 ITDLLARRDIVYAYEVTANCLISRNHNCIDLFDDSKWT 230
           +T+L + RDI+    VTAN L S  +  +  FD+ K T
Sbjct: 815 VTNLKSGRDILRYKAVTANTLFS-IYGFLSAFDNKKVT 851


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 17  FLDKYVGSCLHFNFIIF 67
           FL  ++ +CLHF+ IIF
Sbjct: 110 FLSYWIWTCLHFSKIIF 126


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 17  FLDKYVGSCLHFNFIIF 67
           FL  ++ +CLHF+ IIF
Sbjct: 110 FLSYWIWTCLHFSKIIF 126


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 17  FLDKYVGSCLHFNFIIF 67
           FL  ++ +CLHF+ IIF
Sbjct: 82  FLSYWIWTCLHFSKIIF 98


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 440 FYLKVLVECLAAPVAMVLDQVHGSIQSHQ 354
           FYLK L   + APV    D +  SI  H+
Sbjct: 97  FYLKYLDIRVGAPVRTDADAIQASISPHE 125


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 17  FLDKYVGSCLHFNFIIF 67
           FL  ++ +CLHF+ IIF
Sbjct: 110 FLSYWIWTCLHFSKIIF 126


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 287 NGETEENYTSLSEYHDYEPSLEFDDSELI 373
           N E EE Y   S +HD E   E  DS+++
Sbjct: 277 NNENEETYLKESGFHDLEE--EASDSKVV 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,650
Number of Sequences: 5004
Number of extensions: 36418
Number of successful extensions: 83
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)