Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1929
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0281 + 2160480-2162003                                           27   6.1  
08_01_0789 + 7640021-7640382,7643435-7643480,7644514-7644638,764...    27   8.1  
07_01_0125 - 944207-945778                                             27   8.1  

>03_01_0281 + 2160480-2162003
          Length = 507

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 455 AVSWLFYLKVLVECLAAPVAMVLDQVHG 372
           A+SW FYL     C+ + +   LD V+G
Sbjct: 312 ALSWFFYLLTKNPCVVSKILEELDSVNG 339


>08_01_0789 +
           7640021-7640382,7643435-7643480,7644514-7644638,
           7645028-7645092,7647642-7648186
          Length = 380

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 177 LISRNHNCIDLFDDSKWTRNINPNLIRSG 263
           +++R  N +D F D  W  +I PN + +G
Sbjct: 150 IVNRWMNALDRFSDVGWNNSIEPNPLVTG 178


>07_01_0125 - 944207-945778
          Length = 523

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 47  HFNFIIFLLISDYSTF*TLIRLEDNGFISSK 139
           HF+ IIFL  SD S   +L+ L D+G I  K
Sbjct: 235 HFSRIIFLSDSDLSEQKSLLILRDSGVIRHK 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,154,547
Number of Sequences: 37544
Number of extensions: 225998
Number of successful extensions: 406
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)