Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1929
         (490 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   1.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   5.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.0  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   9.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 240 NPNLIRSGPFKFYMVVM-GKQRKITLVFLSTMTMNQALNLM 359
           NP L RS  +K Y+  M   + + T VFL  M  N  L+++
Sbjct: 678 NPKLARSVLYKIYLNTMESHEVRCTAVFL-LMKTNPPLSML 717


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 284 CNGETEENYTSLSEYHD 334
           CN E EENY  L + ++
Sbjct: 110 CNVEAEENYNLLEDIYE 126


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 430 KFLWNV*QLRWQWC*TRSMDQFRVIKFKAWFIVMVLRK-TSV 308
           K +W    L W+     S++  RV  ++ W   +V+   TSV
Sbjct: 87  KLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVMHSVTSV 128


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 225 ILNHQINLYNYGFSKSNNLL 166
           IL   I  YN+ F   NNL+
Sbjct: 385 ILARDILGYNFDFQNKNNLI 404


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 225 ILNHQINLYNYGFSKSNNLL 166
           IL   I  YN+ F   NNL+
Sbjct: 385 ILARDILGYNFDFQNKNNLI 404


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -3

Query: 431 KVLVECLAAPVAMVLDQVHGSIQSHQIQGLVHSHGTQKD*CNF 303
           KV V C+    A+V+      IQ  Q   +V   G     C +
Sbjct: 84  KVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLGDYLVSCGY 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,869
Number of Sequences: 438
Number of extensions: 2394
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)