Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1928
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    28   1.5  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    26   6.0  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   6.0  
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc...    25   7.9  

>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 393 DAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESD 521
           DA++ +   +E I E   T  +Y IRT+S  Y+  Y  S   D
Sbjct: 215 DAITSLWDPQELICERSITRMDYPIRTLSFSYDSRYLASGSED 257


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 686 RLISSGSPIDLHQRRASASASALVEPSSMPWFSSRLAM 573
           RL+S+G+     +   +ASAS  V P+S  W   RL +
Sbjct: 206 RLVSAGNG----RETVNASASGAVNPTSSQWSDQRLGV 239


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 482  ILRTTVRQEPGIGLKRRHVG 541
            ++ T +  +PG  LK+RH+G
Sbjct: 1171 MMPTNIEHDPGCTLKKRHIG 1190


>SPBC26H8.05c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -2

Query: 686 RLISSGSPIDLHQRRASASASALVEPSSMPWFSSRLA----MHNDTHNLFEVSR 537
           RLI   + ++L QR        L+E S++ W SS +     +H   H+L E+ R
Sbjct: 17  RLIPESNVVELCQR----VRDILIEESNIQWISSPVTICGDIHGQLHDLLELFR 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,981
Number of Sequences: 5004
Number of extensions: 56807
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)