Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1928
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   4.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.5  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 389 PRCCLRNWNRRRSHHRDPVHAFQLWYPYHI 478
           P CC + W+ ++S  R  +++  L YP  I
Sbjct: 364 PNCCGK-WSSQKSEPRRSIYSSLLRYPRSI 392


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 174 EGSRHPRPGRKAPRGTP 124
           E  R+P PG K PR  P
Sbjct: 53  EPRRNPGPGSKGPRDFP 69


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 648 AAGQCFSIGFSGAFIDALVFIAIGHA 571
           A GQ  ++G  G F  A +F  IG+A
Sbjct: 40  ALGQMLTVGGLGVFKIAPLFKGIGYA 65


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 642 GQCFSIGFSGAFIDALVFIAIGHA 571
           GQ  +IG  G F  A +F  IG+A
Sbjct: 80  GQMMTIGGLGVFKIAPIFKGIGYA 103


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 642 GQCFSIGFSGAFIDALVFIAIGHA 571
           GQ  +IG  G F  A +F  IG+A
Sbjct: 133 GQMMTIGGLGVFKIAPIFKGIGYA 156


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 128 VPRGAFRPGRGCRDPSQGYEGLRHR*EGYHRR 223
           +P G F   R  R+    Y GLR   +G   R
Sbjct: 276 LPEGLFASTRDLREIHLAYNGLRDLPKGIFTR 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,056
Number of Sequences: 438
Number of extensions: 4343
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)